HEADSC 3f27 COMMNT S2C correlation file created: Sat Apr 11 20:22:43 EDT 2009 COMMNT COMMNT If you use this database, please cite: COMMNT COMMNT Guoli Wang, Jonathan W. Arthur, and Roland L. Dunbrack, Jr. COMMNT "S2C: A database correlating sequence and atomic COMMNT coordinate numbering in the Protein Data Bank" COMMNT dunbrack.fccc.edu/Guoli/s2c COMMNT Copyright (c) February 2000, April 2002. COMMNT COMMNT SEQCRD columns are as follows: COMMNT COMMNT Column Positions Item COMMNT 1 0-6 Record identifier COMMNT 2 8 Chain COMMNT 3 10 One letter residue code COMMNT 4 12-14 SEQRES three letter residue code COMMNT 5 16-18 ATOM three letter residue code COMMNT 6 20-24 SEQRES residue number COMMNT 7 26-31 ATOM residue number COMMNT 8 33 PDB secondary structure COMMNT 9 35 STRIDE secondary structure COMMNT 10 37-43 Error flags COMMNT COMMNT Secondary structrue annotation: COMMNT H: Helix E: Strand T: Turn COMMNT B: Bridge G: 310Helix C: Coil COMMNT SEQCRD D G GLY --- 1 - - - 367 SEQCRD D S SER --- 2 - - - 367 SEQCRD D F PHE --- 3 - - - 367 SEQCRD D T THR --- 4 - - - 367 SEQCRD D S SER --- 5 - - - 367 SEQCRD D R ARG --- 6 - - - 367 SEQCRD D I ILE ILE 7 68 C C 4 SEQCRD D R ARG ARG 8 69 C C 4 SEQCRD D R ARG ARG 9 70 C C 4 SEQCRD D P PRO PRO 10 71 C C 4 SEQCRD D M MET MET 11 72 C C 4 SEQCRD D N ASN ASN 12 73 H C 45 SEQCRD D A ALA ALA 13 74 H H 4 SEQCRD D F PHE PHE 14 75 H H 4 SEQCRD D M MET MET 15 76 H H 4 SEQCRD D V VAL VAL 16 77 H H 4 SEQCRD D W TRP TRP 17 78 H H 4 SEQCRD D A ALA ALA 18 79 H H 4 SEQCRD D K LYS LYS 19 80 H H 4 SEQCRD D D ASP ASP 20 81 H H 4 SEQCRD D E GLU GLU 21 82 H H 4 SEQCRD D R ARG ARG 22 83 H H 4 SEQCRD D K LYS LYS 23 84 H H 4 SEQCRD D R ARG ARG 24 85 H H 4 SEQCRD D L LEU LEU 25 86 H H 4 SEQCRD D A ALA ALA 26 87 H H 4 SEQCRD D Q GLN GLN 27 88 H H 4 SEQCRD D Q GLN GLN 28 89 H H 4 SEQCRD D N ASN ASN 29 90 H T 45 SEQCRD D P PRO PRO 30 91 C T 45 SEQCRD D D ASP ASP 31 92 C T 45 SEQCRD D L LEU LEU 32 93 C T 45 SEQCRD D H HIS HIS 33 94 H C 45 SEQCRD D N ASN ASN 34 95 H H 4 SEQCRD D A ALA ALA 35 96 H H 4 SEQCRD D E GLU GLU 36 97 H H 4 SEQCRD D L LEU LEU 37 98 H H 4 SEQCRD D S SER SER 38 99 H H 4 SEQCRD D K LYS LYS 39 100 H H 4 SEQCRD D M MET MET 40 101 H H 4 SEQCRD D L LEU LEU 41 102 H H 4 SEQCRD D G GLY GLY 42 103 H H 4 SEQCRD D K LYS LYS 43 104 H H 4 SEQCRD D S SER SER 44 105 H H 4 SEQCRD D W TRP TRP 45 106 H H 4 SEQCRD D K LYS LYS 46 107 H H 4 SEQCRD D A ALA ALA 47 108 H H 4 SEQCRD D L LEU LEU 48 109 H C 45 SEQCRD D T THR THR 49 110 H C 45 SEQCRD D L LEU LEU 50 111 H H 4 SEQCRD D A ALA ALA 51 112 H H 4 SEQCRD D E GLU GLU 52 113 H H 4 SEQCRD D K LYS LYS 53 114 H H 4 SEQCRD D R ARG ARG 54 115 H H 4 SEQCRD D P PRO PRO 55 116 H H 4 SEQCRD D F PHE PHE 56 117 H H 4 SEQCRD D V VAL VAL 57 118 H H 4 SEQCRD D E GLU GLU 58 119 H H 4 SEQCRD D E GLU GLU 59 120 H H 4 SEQCRD D A ALA ALA 60 121 H H 4 SEQCRD D E GLU GLU 61 122 H H 4 SEQCRD D R ARG ARG 62 123 H H 4 SEQCRD D L LEU LEU 63 124 H H 4 SEQCRD D R ARG ARG 64 125 H H 4 SEQCRD D V VAL VAL 65 126 H H 4 SEQCRD D Q GLN GLN 66 127 H H 4 SEQCRD D H HIS HIS 67 128 H H 4 SEQCRD D M MET MET 68 129 H H 4 SEQCRD D Q GLN GLN 69 130 H H 4 SEQCRD D D ASP ASP 70 131 H H 4 SEQCRD D H HIS HIS 71 132 H T 45 SEQCRD D P PRO PRO 72 133 C T 45 SEQCRD D N ASN ASN 73 134 C T 45 SEQCRD D Y TYR TYR 74 135 C T 45 SEQCRD D K LYS LYS 75 136 C C 4 SEQCRD D Y TYR TYR 76 137 C C 4 SEQCRD D R ARG ARG 77 138 C C 4 SEQCRD D P PRO PRO 78 139 C C 4 SEQCRD D R ARG ARG 79 140 C C 4 SEQCRD D R ARG ARG 80 141 C C 4 SEQCRD D R ARG --- 81 - - - 367 SEQCRD D K LYS --- 82 - - - 367 SEQCRD D Q GLN --- 83 - - - 367 COMMNT S2CERR 1 0 No standard amino acid code S2CERR 2 0 SEQRES and ATOM residue names differ S2CERR 3 9 No ATOM record S2CERR 4 74 SEQRES and ATOM residue numbers differ S2CERR 5 12 PDB and STRIDE secondary structures differ S2CERR 6 9 PDB secondary structure is absent S2CERR 7 9 STRIDE secondary structure is absent COMMNT COMMNT Crystallographic technical parameters: PARAME method 'X-RAY DIFFRACTION' PARAME resolution 2.750 PARAME R-factor 0.243 PARAME B-factor 25.696 COMMNT COMMNT Reference database information: DATABA source: DATABA UNP: SOX17_MOUSE (Q61473) DATABA PDB: 3F27 (3F27) DATABA PDB: 3F27 (3F27) COMMNT DATABA mutation: DATABA SER D 2 --> ? ? 'EXPRESSION TAG' DATABA PHE D 3 --> ? ? 'EXPRESSION TAG' DATABA THR D 4 --> ? ? 'EXPRESSION TAG' DATABA GLY D 1 --> ? ? 'EXPRESSION TAG'