Contacts of the helix formed by residues 15 - 45 (chain B) in PDB entry 4IL6


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASP 15 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11B  VAL      3.9    14.5    -      -       -      +
     12B  LEU*     3.1    15.6    +      -       -      +
     13B  ILE      3.3     1.0    -      -       -      -
     14B  ASN*     1.3    80.0    -      -       -      +
     16B  PRO*     1.3    64.9    -      -       -      +
     17B  GLY      3.5     4.2    +      -       -      -
     18B  ARG*     3.1    30.7    +      -       +      +
     19B  LEU*     3.0    17.7    +      -       -      +
    118B  TRP*     3.8    14.8    -      -       -      +
      4L  ASN*     2.7    31.5    +      -       -      +
      6L  ASN*     3.0    18.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with PRO 16 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12B  LEU      5.1     0.2    -      -       -      +
     13B  ILE      5.3     0.4    -      -       -      +
     14B  ASN      3.6     8.3    -      -       -      +
     15B  ASP*     1.3    86.7    -      -       -      +
     17B  GLY*     1.3    57.2    +      -       -      +
     19B  LEU*     3.3     9.2    +      -       +      +
     20B  ILE*     3.0    37.1    +      -       +      +
    123B  PHE*     3.8    39.7    -      -       +      +
    131B  PRO*     4.1    10.8    -      -       +      -
    132B  ALA      4.8     0.2    -      -       -      +
    133B  LEU*     3.9    36.8    -      -       +      -
    632B  DMS      4.5    10.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 17 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15B  ASP*     3.3     5.4    +      -       -      -
     16B  PRO*     1.3    78.6    -      -       -      +
     18B  ARG*     1.3    57.7    +      -       -      +
     20B  ILE*     3.4     5.9    +      -       -      +
     21B  ALA*     3.0    20.6    +      -       -      +
    114B  HIS*     3.5    21.1    -      -       -      +
    118B  TRP*     4.0     9.2    +      -       -      -
    123B  PHE*     3.4    30.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 18 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12B  LEU*     3.6    18.9    -      -       +      +
     15B  ASP*     3.1    21.6    +      -       -      +
     17B  GLY*     1.3    73.5    -      -       -      +
     19B  LEU*     1.3    59.3    +      -       -      +
     21B  ALA*     3.4     7.0    -      -       -      +
     22B  ALA*     2.9    29.5    +      -       -      +
    115B  TRP*     3.0    65.3    +      -       +      +
    116B  VAL*     5.0     2.4    -      -       -      +
    118B  TRP*     3.6    23.7    -      -       +      +
    620B  SQD      2.9    40.7    +      -       -      +
      4L  ASN*     3.4    35.1    -      -       -      +
      7L  ARG*     4.4     3.4    -      -       -      +
    101L  UNL      4.2     4.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 19 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12B  LEU*     4.0    25.2    -      -       +      +
     15B  ASP      3.0    13.9    +      -       -      +
     16B  PRO*     3.5     9.2    -      -       +      +
     18B  ARG*     1.3    74.7    -      -       -      +
     20B  ILE*     1.3    58.5    +      -       -      +
     22B  ALA*     3.4     1.2    +      -       -      +
     23B  HIS*     2.9    57.6    +      -       +      +
    133B  LEU*     4.8     4.5    -      -       +      -
    234B  ILE*     3.7    29.6    -      -       +      -
    610B  CLA      4.2     5.4    -      -       +      -
    612B  CLA      3.6    46.2    -      -       +      +
    615B  CLA      4.4    12.8    -      -       +      -
    632B  DMS      6.0     0.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 20 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     16B  PRO*     3.0    20.4    +      -       +      +
     17B  GLY      3.6     6.3    -      -       -      +
     18B  ARG      3.3     0.2    -      -       -      -
     19B  LEU*     1.3    77.0    -      -       -      +
     21B  ALA*     1.3    52.3    +      -       -      +
     23B  HIS*     3.3     1.9    +      -       -      +
     24B  LEU*     2.7    49.4    +      -       +      +
    114B  HIS*     4.1     9.0    -      -       +      +
    123B  PHE*     3.7    33.0    -      -       +      -
    615B  CLA      3.6    60.3    -      -       +      +
    616B  CLA      3.9    25.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 21 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17B  GLY      3.0    11.7    +      -       -      +
     18B  ARG*     3.4    10.3    -      -       -      +
     20B  ILE*     1.3    75.8    -      -       -      +
     22B  ALA*     1.3    57.7    +      -       -      +
     24B  LEU*     3.2     4.0    +      -       -      +
     25B  MET*     2.8    26.6    +      -       -      +
    111B  ALA*     3.4    34.9    -      -       +      +
    114B  HIS*     3.9     4.3    -      -       -      -
    115B  TRP*     3.6    29.4    -      -       +      +
    617B  BCR      4.7     2.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 22 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12B  LEU*     3.6    25.6    -      -       +      -
     18B  ARG      2.9    20.7    +      -       -      +
     19B  LEU      3.7     3.1    -      -       -      +
     21B  ALA*     1.3    72.2    -      -       -      +
     23B  HIS*     1.3    58.9    +      -       +      +
     25B  MET*     3.3     3.5    +      -       -      +
     26B  HIS*     2.9    28.4    +      -       -      +
    612B  CLA      3.7    22.9    -      -       +      +
    614B  CLA      3.6    18.1    -      -       +      +
    617B  BCR      4.5     4.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 23 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19B  LEU*     2.9    31.0    +      -       +      +
     20B  ILE      3.6     4.3    -      -       -      +
     22B  ALA*     1.3    72.5    -      -       +      +
     24B  LEU*     1.3    56.6    +      -       -      +
     26B  HIS*     3.4     5.8    +      -       -      +
     27B  THR*     2.7    36.9    +      -       -      -
    610B  CLA      3.3    29.6    -      -       +      -
    612B  CLA      2.2    79.1    +      +       +      +
    615B  CLA      2.7    36.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 24 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20B  ILE*     2.7    29.6    +      -       +      +
     21B  ALA      3.4     4.9    -      -       -      +
     23B  HIS*     1.3    71.1    -      -       -      +
     25B  MET*     1.3    59.9    +      -       -      +
     27B  THR*     3.3     3.9    +      -       -      -
     28B  ALA*     2.9    29.1    +      -       -      +
    107B  LEU*     3.7    30.0    -      -       +      +
    110B  ALA*     3.7    32.3    -      -       +      +
    111B  ALA*     3.7    12.8    -      -       +      +
    114B  HIS*     3.7    20.6    -      -       +      -
    615B  CLA      3.7    10.5    -      -       -      -
    616B  CLA      3.5    35.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 25 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     21B  ALA      2.8    13.1    +      -       -      +
     22B  ALA      3.6     7.6    -      -       -      +
     24B  LEU*     1.3    76.2    -      -       -      +
     26B  HIS*     1.3    58.1    +      -       -      +
     28B  ALA*     3.2     8.1    +      -       -      +
     29B  LEU*     3.0    33.9    +      -       +      +
    108B  PHE*     3.5    35.7    -      -       +      +
    111B  ALA*     3.9    16.5    -      -       +      +
    614B  CLA      3.6    14.1    -      -       +      -
    617B  BCR      3.6    61.7    -      -       +      -
    620B  SQD      4.1    15.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with HIS 26 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22B  ALA      2.9    16.3    +      -       -      +
     23B  HIS      3.6     5.1    +      -       -      +
     25B  MET*     1.3    77.0    -      -       -      +
     27B  THR*     1.3    64.7    +      -       -      +
     29B  LEU*     3.3     4.8    +      -       -      +
     30B  VAL*     3.0    46.8    +      -       +      +
    612B  CLA      3.5    60.0    +      +       +      +
    613B  CLA      2.2    70.3    +      +       -      -
    614B  CLA      4.1     9.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 27 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23B  HIS      2.7    23.0    +      -       -      -
     24B  LEU*     3.7     7.4    -      -       -      -
     25B  MET      3.3     0.2    -      -       -      -
     26B  HIS*     1.3    79.6    +      -       -      +
     28B  ALA*     1.3    57.8    +      -       -      +
     30B  VAL*     3.3     1.7    +      -       -      -
     31B  ALA*     3.0    27.5    +      -       -      +
    107B  LEU*     3.5    20.4    -      -       +      -
    605B  CLA      3.5    39.9    -      -       +      +
    612B  CLA      3.3    29.0    +      -       +      +
    615B  CLA      3.8     9.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 28 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24B  LEU      2.9    17.4    +      -       -      +
     25B  MET*     3.2     8.3    +      -       -      +
     27B  THR*     1.3    74.9    -      -       -      +
     29B  LEU*     1.3    60.1    +      -       -      +
     32B  GLY*     2.9    15.9    +      -       -      -
    104B  SER*     2.6    46.2    +      -       -      +
    107B  LEU*     3.7    15.7    -      -       +      +
    108B  PHE*     3.8    11.2    -      -       -      +
    620B  SQD      4.2    10.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 29 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25B  MET*     3.0    21.5    +      -       +      +
     26B  HIS      3.5     6.3    -      -       -      +
     28B  ALA*     1.3    77.3    -      -       -      +
     30B  VAL*     1.3    58.7    +      -       +      +
     32B  GLY*     3.5     1.1    +      -       -      -
     33B  TRP*     2.9    22.5    +      -       -      +
    613B  CLA      4.4     9.0    -      -       +      -
    614B  CLA      3.6    32.1    -      -       +      -
    617B  BCR      3.7    44.9    -      -       +      -
    618B  BCR      3.4    35.0    -      -       +      +
    620B  SQD      3.8    29.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 30 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26B  HIS*     3.0    42.2    +      -       +      +
     27B  THR*     3.3     1.1    +      -       -      -
     29B  LEU*     1.3    74.5    -      -       -      +
     31B  ALA*     1.3    59.6    +      -       -      +
     33B  TRP*     3.2     4.3    +      -       -      +
     34B  ALA*     3.0    26.7    +      -       -      +
    605B  CLA      3.8    49.9    -      -       +      +
    612B  CLA      4.4     6.3    -      -       +      -
    613B  CLA      3.8    38.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 31 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27B  THR      3.0    16.8    +      -       -      +
     28B  ALA      4.1     2.7    -      -       -      +
     30B  VAL*     1.3    73.8    -      -       -      +
     32B  GLY*     1.3    59.5    +      -       -      +
     34B  ALA*     3.3     1.9    +      -       -      +
     35B  GLY*     3.0    23.7    +      -       -      -
    100B  HIS*     3.4    29.3    -      -       +      +
    103B  LEU*     4.2    16.6    -      -       +      -
    104B  SER*     4.3     6.3    -      -       -      +
    107B  LEU*     4.6     0.9    -      -       +      -
    605B  CLA      3.7    25.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 32 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     28B  ALA      2.9    17.4    +      -       -      -
     29B  LEU      3.8     0.2    -      -       -      -
     31B  ALA*     1.3    73.3    -      -       -      +
     33B  TRP*     1.3    55.5    +      -       -      +
     35B  GLY*     3.4     0.9    +      -       -      -
     36B  SER*     2.7    37.2    +      -       -      -
    101B  ILE*     3.8     5.9    -      -       -      +
    104B  SER*     3.6    12.5    -      -       -      -
    618B  BCR      3.5    27.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 33 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29B  LEU      2.9    15.3    +      -       -      +
     30B  VAL      3.2     7.4    +      -       -      +
     32B  GLY*     1.3    73.3    -      -       -      +
     34B  ALA*     1.3    75.8    +      -       -      +
     36B  SER*     3.3     3.0    +      -       -      -
     37B  MET*     2.7    60.7    +      -       +      +
     61B  PHE*     4.0    10.1    -      +       -      -
     62B  VAL*     3.6    24.0    -      -       +      -
    604B  CLA      3.5    31.2    -      -       +      -
    605B  CLA      3.6    39.5    -      -       +      -
    607B  CLA      3.3    32.0    -      -       +      +
    613B  CLA      3.6    28.0    -      -       +      -
    618B  BCR      3.7    15.8    -      -       +      +
    101t  BCR      3.6    22.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 34 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30B  VAL      3.0     7.1    +      -       -      +
     31B  ALA      3.3     9.2    +      -       -      +
     33B  TRP*     1.3    87.3    -      -       -      +
     35B  GLY*     1.3    61.0    +      -       -      +
     37B  MET*     3.8     0.9    -      -       -      +
     38B  ALA*     3.0    19.2    +      -       -      +
    100B  HIS*     3.9    11.4    -      -       +      -
    605B  CLA      3.4    61.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 35 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31B  ALA      3.0    12.7    +      -       -      -
     34B  ALA*     1.3    76.0    -      -       -      +
     36B  SER*     1.3    62.5    +      -       -      +
     38B  ALA*     3.4     3.3    +      -       -      +
     39B  LEU*     3.0    28.8    +      -       -      +
     97B  ALA*     3.9    19.9    -      -       -      +
    100B  HIS*     3.9     5.7    -      -       -      +
    101B  ILE*     3.7    21.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with SER 36 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32B  GLY      2.7    24.9    +      -       -      -
     33B  TRP      3.6     4.0    -      -       -      -
     35B  GLY*     1.3    71.4    -      -       -      +
     37B  MET*     1.3    57.8    +      -       -      +
     39B  LEU*     3.2    10.0    +      -       -      +
     40B  TYR*     2.9    30.5    +      -       -      +
    101B  ILE*     3.9     2.2    -      -       -      +
    618B  BCR      3.2    26.0    -      -       -      +
    101t  BCR      3.9    28.7    -      -       -      +
    103t  LMT      4.3    16.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with MET 37 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33B  TRP*     2.7    53.6    +      -       +      +
     34B  ALA      3.8     3.1    -      -       -      +
     36B  SER*     1.3    72.5    -      -       -      +
     38B  ALA*     1.3    58.0    +      -       -      +
     40B  TYR*     3.4    32.7    +      -       +      -
     41B  GLU*     2.9    48.9    +      -       +      +
     61B  PHE*     5.3     1.6    -      -       +      -
     62B  VAL*     3.8    20.6    -      -       +      -
    607B  CLA      3.7    42.0    -      -       +      +
    101t  BCR      3.6    18.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 38 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34B  ALA      3.0    17.5    +      -       -      +
     35B  GLY      3.6     4.0    -      -       -      +
     37B  MET*     1.3    78.2    -      -       -      +
     39B  LEU*     1.3    57.3    +      -       -      +
     41B  GLU*     3.3     3.8    +      -       -      +
     42B  LEU*     2.9    36.2    +      -       +      +
     62B  VAL*     3.8     9.6    -      -       -      +
     66B  MET*     4.0    15.6    -      -       +      +
     93B  PHE      4.8     1.3    -      -       -      +
     97B  ALA*     3.8    18.2    -      -       +      -
    605B  CLA      3.8    16.6    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 39 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35B  GLY      3.0    24.8    +      -       -      +
     36B  SER*     3.6     5.4    -      -       -      +
     38B  ALA*     1.3    74.1    -      -       -      +
     40B  TYR*     1.3    65.6    +      -       -      +
     42B  LEU*     3.3    10.1    +      -       +      +
     43B  ALA*     2.9    24.4    +      -       -      +
     94B  GLU*     5.3     1.1    -      -       +      +
     97B  ALA*     3.9    18.8    -      -       +      -
    101B  ILE*     4.4    16.8    -      -       +      -
    402a  LMT      3.8    52.5    -      -       +      +
    301o  HTG      3.9    22.4    -      -       +      -
    102t  UNL      5.3     0.9    -      -       +      -
    103t  LMT      4.1    21.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with TYR 40 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36B  SER      2.9    17.4    +      -       -      +
     37B  MET*     3.5    20.4    -      -       +      +
     39B  LEU*     1.3    75.0    -      -       -      +
     41B  GLU*     1.3    64.5    +      -       +      +
     43B  ALA*     3.2     3.1    +      -       -      +
     44B  THR*     3.1    35.4    +      -       +      +
    607B  CLA      3.0    59.4    +      +       +      -
    622B  LMG      3.6     7.1    +      -       -      -
    101M  LMT      3.4    26.8    +      -       +      +
      1t  FME      5.8     0.7    -      -       -      -
      4t  ILE*     3.9    18.4    -      -       +      -
    101t  BCR      3.7    25.6    -      -       +      -
    103t  LMT      4.0    31.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 41 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37B  MET*     2.9    33.6    +      -       +      +
     38B  ALA*     3.7     5.2    -      -       -      +
     40B  TYR*     1.3    79.0    -      -       +      +
     42B  LEU*     1.3    52.1    +      -       -      +
     44B  THR*     3.1     7.5    +      -       -      -
     45B  PHE*     2.8    39.5    +      -       -      +
     59B  GLY      4.5     1.2    -      -       -      +
     60B  MET*     3.6    18.4    -      -       +      +
     61B  PHE*     2.7    33.1    +      -       -      +
     62B  VAL*     2.9    18.8    +      -       -      +
     63B  LEU*     2.9    41.4    +      -       +      +
    607B  CLA      5.0     3.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 42 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38B  ALA*     2.9    25.0    +      -       +      +
     39B  LEU*     3.8    12.8    -      -       +      +
     41B  GLU*     1.3    76.2    -      -       -      +
     43B  ALA*     1.3    60.9    +      -       -      +
     44B  THR      3.4     0.5    +      -       -      -
     45B  PHE*     3.8    14.0    +      -       +      +
     63B  LEU*     4.5     9.4    -      -       +      -
     66B  MET*     6.1     0.4    -      -       +      -
     78B  TRP*     4.1    28.8    -      -       +      -
     93B  PHE*     3.7    39.9    -      -       +      +
     94B  GLU*     3.8    28.9    -      -       +      +
     97B  ALA*     5.0     0.4    -      -       +      -
    402a  LMT      3.8    14.6    -      -       +      +
    301o  HTG      4.0    24.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 43 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39B  LEU      2.9    17.1    +      -       -      +
     40B  TYR      3.2     6.0    +      -       -      +
     42B  LEU*     1.3    77.5    -      -       -      +
     44B  THR*     1.3    61.4    +      -       -      +
     45B  PHE      5.3     0.2    -      -       -      -
     72a  LEU*     4.5     1.6    -      -       +      -
    402a  LMT      3.3    51.3    -      -       +      +
    103t  LMT      3.8    36.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 44 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40B  TYR*     3.1    41.9    +      -       +      +
     41B  GLU*     3.1     9.2    +      -       -      -
     43B  ALA*     1.3    83.2    -      -       +      +
     45B  PHE*     1.3    63.7    +      -       -      +
     46B  ASP*     3.6     3.1    +      -       -      +
     58B  GLN*     4.1     3.5    -      -       -      +
     60B  MET*     3.5    15.4    -      -       -      +
    607B  CLA      4.1     9.5    -      -       -      -
    622B  LMG      5.5     2.9    -      -       -      +
    101M  LMT      5.1     1.1    -      -       -      +
    103t  LMT      3.8    38.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 45 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41B  GLU      2.8    23.2    +      -       -      +
     42B  LEU*     3.8    12.9    +      -       +      +
     43B  ALA      3.8     0.9    -      -       -      -
     44B  THR*     1.3    74.2    +      -       -      +
     46B  ASP*     1.3    65.2    +      -       -      +
     47B  PRO*     3.5    34.5    -      -       +      +
     53B  ASN      5.3     0.9    -      -       -      -
     54B  PRO*     5.7     0.7    -      -       +      -
     55B  MET*     3.7    26.2    -      -       +      -
     58B  GLN*     3.4    33.2    -      -       -      -
     60B  MET*     3.8    15.5    -      -       +      -
     63B  LEU*     3.9    24.0    -      -       +      -
     78B  TRP*     3.6    34.2    -      +       +      -
     80B  ILE*     4.5    10.1    -      -       +      -
    301o  HTG      5.4     2.4    +      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il