Contacts of the helix formed by residues 572 - 615 (chain F) in PDB entry 5YWB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 572 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321F PHE* 5.2 0.7 - - - -
325F ASP* 4.2 11.3 + - - -
570F ASP 3.0 8.9 + - - -
571F LEU* 1.3 74.6 - - - +
573F PRO* 1.3 75.8 - - - +
574F SER* 2.9 9.1 + - - -
575F VAL* 2.9 31.0 + - - +
576F ALA* 3.5 5.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 573 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324F VAL* 4.3 9.4 - - + -
571F LEU 3.5 3.8 - - - +
572F SER* 1.3 86.5 - - - +
574F SER* 1.3 62.6 + - - +
576F ALA* 3.1 10.0 + - + +
577F PHE* 3.0 47.3 + - + -
1035F ALA 5.8 0.2 - - - +
1038F THR* 3.9 13.7 - - - +
1039F ASP* 3.8 35.7 - - + +
1278F ALA* 5.7 5.6 - - + +
1279F GLY* 5.9 2.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 574 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320F ILE* 5.7 0.2 - - - +
321F PHE* 3.5 33.0 - - - +
324F VAL* 3.2 28.2 - - - +
325F ASP* 2.5 32.0 + - - -
572F SER* 2.9 5.0 + - - -
573F PRO* 1.3 78.0 - - - +
575F VAL* 1.3 62.9 + - - +
577F PHE* 4.0 1.3 - - - +
578F ALA* 2.9 27.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 575 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321F PHE* 3.8 20.9 - - + -
455F ILE* 3.4 37.9 - - + +
456F LEU* 5.3 2.0 - - - -
559F PHE* 5.9 2.2 - - + -
562F HIS* 6.2 2.7 - - + +
571F LEU* 4.8 11.7 - - + -
572F SER* 2.9 27.5 + - - +
574F SER* 1.3 75.4 - - - +
576F ALA* 1.3 64.6 + - - +
578F ALA* 3.9 1.0 - - - +
579F SER* 2.9 26.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 576 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
559F PHE* 3.4 34.6 - - + -
571F LEU* 4.5 4.0 - - + +
572F SER 3.5 2.9 + - - +
573F PRO* 3.1 17.2 + - + +
575F VAL* 1.3 78.1 - - - +
577F PHE* 1.3 61.7 + - + +
579F SER* 2.3 21.1 + - - -
580F LEU* 3.0 13.0 + - - +
1034F LEU* 4.5 9.4 - - + -
1038F THR* 4.4 17.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 577 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320F ILE* 4.9 7.9 - - + -
324F VAL* 5.3 2.7 - - + -
573F PRO* 3.0 43.9 + - + +
574F SER* 4.2 3.4 - - - +
576F ALA* 1.3 79.3 - - + +
578F ALA* 1.3 60.9 + - - +
580F LEU* 3.2 14.4 + - + +
581F SER* 2.9 33.0 + - - -
1031F ASP* 5.0 1.8 - - + -
1034F LEU* 5.1 6.3 - - + -
1035F ALA* 3.4 35.2 - - + -
1038F THR* 4.4 3.6 - - - -
1279F GLY* 4.0 6.1 - - - -
1282F GLY* 3.4 21.1 - - - -
1283F LEU* 3.3 34.5 - - + -
1286F THR* 3.3 27.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 578 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317F PRO* 4.1 13.9 - - + +
320F ILE* 5.0 3.6 - - - +
321F PHE* 3.9 24.9 - - + -
455F ILE* 4.4 17.5 - - + -
574F SER 2.9 19.5 + - - +
575F VAL* 3.9 2.9 - - - +
577F PHE* 1.3 76.0 - - - +
579F SER* 1.3 57.6 + - - +
581F SER* 3.3 7.2 + - - -
582F LEU* 3.0 35.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 579 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452F LEU* 6.5 0.9 - - - -
455F ILE* 4.8 9.5 - - - +
559F PHE* 3.0 24.4 - - - -
575F VAL* 2.9 16.0 + - - -
576F ALA 2.3 27.0 + - - -
578F ALA* 1.3 77.4 - - - +
580F LEU* 1.3 55.3 + - - +
582F LEU* 3.9 6.2 - - - +
583F PHE* 2.9 32.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 580 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555F VAL* 5.2 12.6 - - + -
559F PHE* 5.1 4.9 - - + -
576F ALA 3.0 8.8 + - - +
577F PHE* 3.2 20.1 + - + +
579F SER* 1.3 81.5 + - - +
581F SER* 1.3 58.1 + - - +
583F PHE* 3.4 20.6 + - + +
584F HIS* 2.9 31.4 + - + +
1027F LEU* 6.4 1.1 - - + -
1031F ASP* 3.7 32.1 - - + +
1283F LEU* 6.2 0.4 - - + -
1286F THR* 4.1 20.9 - - + -
1287F TYR* 5.9 1.8 - - + -
1290F MET* 5.2 6.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 581 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317F PRO* 3.7 24.0 - - - -
320F ILE* 4.3 11.1 - - - +
577F PHE 2.9 18.5 + - - -
578F ALA* 3.6 5.5 - - - -
579F SER 3.2 0.2 - - - -
580F LEU* 1.3 74.2 - - - +
582F LEU* 1.3 67.5 + - - +
584F HIS* 3.1 8.0 + - - +
585F ILE* 3.0 29.1 + - - +
1286F THR* 3.7 22.2 + - - +
1289F LEU* 4.9 5.5 - - - +
1290F MET* 5.6 1.3 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 582 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314F PHE* 4.2 26.0 - - + +
317F PRO* 4.4 12.1 - - + -
448F GLY* 4.7 10.4 - - - +
451F LEU* 3.8 39.0 - - + -
452F LEU* 4.2 20.9 - - + +
455F ILE* 3.7 30.3 - - + -
578F ALA 3.0 16.9 + - - +
579F SER* 4.0 5.4 - - - +
581F SER* 1.3 75.4 - - - +
583F PHE* 1.3 57.0 + - - +
585F ILE* 3.3 7.6 + - + +
586F LEU* 2.9 27.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 583 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466F VAL* 6.2 0.4 - - + -
551F PRO* 3.1 54.7 - - + -
552F ILE* 5.6 2.0 - - + -
554F ALA* 4.6 7.6 - - + -
555F VAL* 3.4 23.3 - - + -
579F SER 2.9 20.3 + - - +
580F LEU* 3.5 18.4 - - + +
582F LEU* 1.3 77.7 - - - +
584F HIS* 1.3 63.0 + - + +
586F LEU* 3.1 15.3 + - + +
587F VAL* 2.9 46.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 584 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580F LEU* 2.9 19.9 + - + +
581F SER* 3.6 5.2 - - - +
583F PHE* 1.3 81.7 - - + +
585F ILE* 1.3 72.1 + - + +
587F VAL* 3.0 21.3 + - + +
588F THR* 3.1 20.5 + - - -
1027F LEU* 6.2 2.5 - - + -
1149F LEU* 4.7 12.8 - - + -
1290F MET* 3.5 41.1 - - + +
1294F TYR* 2.8 44.8 + + - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 585 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313F GLY* 4.8 11.0 - - - +
314F PHE* 3.4 37.7 - - + -
317F PRO* 4.7 12.3 - - + -
444F GLN* 2.9 25.3 + - - +
581F SER* 3.0 19.1 + - - +
582F LEU* 3.5 10.1 - - - +
584F HIS* 1.3 83.6 - - + +
586F LEU* 1.3 55.9 + - - +
588F THR* 3.7 4.8 + - - +
589F PRO* 3.1 13.9 - - - +
1289F LEU* 6.1 5.6 - - + +
1290F MET* 6.5 1.1 - - - -
1293F ASN* 5.1 12.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 586 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314F PHE* 6.3 0.2 - - - -
444F GLN* 4.6 4.7 - - + +
445F ILE* 3.5 42.4 - - + +
448F GLY* 6.0 6.7 - - - -
449F VAL 6.3 0.9 - - - +
452F LEU* 5.3 9.9 - - + -
467F ILE* 3.7 38.4 - - + -
582F LEU 2.9 14.0 + - - +
583F PHE* 3.1 17.5 + - + +
585F ILE* 1.3 76.8 - - - +
587F VAL* 1.3 64.4 + - + +
589F PRO* 3.1 12.1 - - - +
590F LEU* 3.9 20.0 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 587 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547F ASN* 4.5 13.5 - - + +
551F PRO* 4.0 13.0 - - + -
583F PHE* 2.9 51.7 + - + +
584F HIS* 3.0 14.3 + - + +
586F LEU* 1.3 78.1 - - + +
588F THR* 1.3 68.8 + - - +
590F LEU* 3.1 23.8 + - + +
591F PHE* 3.6 9.9 + - + +
1145F ARG* 5.8 5.2 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 588 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584F HIS* 3.1 16.8 + - - -
585F ILE* 4.2 4.4 - - - +
587F VAL* 1.3 79.8 - - - +
589F PRO* 1.3 69.2 - - + +
590F LEU 3.3 0.3 + - - -
591F PHE* 3.5 7.8 + - - +
592F LEU* 3.4 20.7 + - + +
1145F ARG* 4.9 8.7 + - - +
1294F TYR* 2.9 28.5 + - + +
1297F TRP* 3.9 33.4 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 589 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306F ARG* 5.8 1.3 - - - +
441F MET* 4.4 24.6 - - + +
444F GLN* 3.4 32.3 - - + +
445F ILE* 5.5 3.6 - - + -
585F ILE 3.1 24.5 - - - +
586F LEU 3.1 11.2 - - - +
588F THR* 1.3 84.6 - - + +
590F LEU* 1.3 63.7 + - + +
592F LEU* 3.0 14.5 + - + +
593F LEU* 3.0 24.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 590 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441F MET* 5.7 3.4 - - + -
445F ILE* 5.8 5.2 - - + -
467F ILE* 6.2 0.2 - - + -
470F LEU* 3.7 37.7 - - + -
474F GLN* 5.9 3.6 - - + -
547F ASN* 3.2 28.1 + - + +
551F PRO* 5.5 4.7 - - + -
586F LEU* 3.9 27.6 - - + +
587F VAL* 3.1 17.3 + - + +
589F PRO* 1.3 78.5 - - + +
591F PHE* 1.3 64.6 + - - +
592F LEU 3.3 0.3 + - - -
593F LEU* 3.4 36.9 + - + +
594F SER* 3.8 2.4 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 591 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544F ILE* 3.5 44.4 - - + -
547F ASN* 3.7 15.3 - - + +
548F THR* 6.1 0.2 - - - -
587F VAL* 3.6 8.2 + - + +
588F THR 3.5 9.1 + - - +
589F PRO 3.4 0.2 - - - -
590F LEU* 1.3 78.0 - - - +
592F LEU* 1.3 66.5 + - + +
594F SER* 2.7 24.4 + - - -
595F SER* 4.0 9.2 + - - -
1138F SER* 5.6 1.8 - - - -
1141F GLU* 4.4 20.4 - - + -
1142F CYS* 3.4 35.2 - - - -
1145F ARG* 3.6 36.1 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 592 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437F ASN* 3.8 28.0 - - - +
588F THR* 3.4 16.5 + - + +
589F PRO* 3.0 14.6 + - + +
591F PHE* 1.3 85.0 - - + +
593F LEU* 1.3 65.9 + - - +
595F SER* 3.1 13.0 + - - +
596F VAL* 3.0 25.5 + - + +
1142F CYS* 5.7 3.6 - - - -
1145F ARG* 6.0 0.2 - - - +
1297F TRP* 3.3 45.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 593 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441F MET* 4.2 26.5 - - + -
474F GLN* 5.2 21.1 - - + +
478F ALA* 5.6 7.0 - - + -
589F PRO 3.0 9.1 + - - +
590F LEU* 3.4 40.4 - - + +
591F PHE 3.4 0.2 - - - -
592F LEU* 1.3 75.8 - - - +
594F SER* 1.3 68.6 + - - +
596F VAL* 3.1 21.8 + - + +
597F VAL* 3.1 27.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 594 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474F GLN* 6.0 0.4 - - - -
481F LEU* 4.5 16.7 - - - +
536F PHE* 5.6 2.6 - - - -
540F THR* 5.6 7.2 - - - +
543F SER* 3.7 24.9 - - - -
544F ILE* 4.2 12.6 - - - +
547F ASN* 5.1 0.4 - - - -
590F LEU 3.8 4.4 + - - -
591F PHE* 2.7 23.3 + - - -
593F LEU* 1.3 89.3 - - - +
595F SER* 1.3 62.1 + - - +
597F VAL* 3.5 17.2 + - - +
598F ARG* 4.0 4.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 595 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434F LEU* 5.0 3.9 - - - +
536F PHE* 6.5 0.4 - - - -
591F PHE* 4.3 12.6 + - - -
592F LEU* 3.1 13.5 + - - +
594F SER* 1.3 81.3 + - - +
596F VAL* 1.3 66.1 + - - +
598F ARG* 3.2 34.2 + - - +
599F SER* 3.7 5.2 + - - -
1138F SER* 4.1 21.8 - - - -
1142F CYS* 5.5 2.1 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 596 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431F PHE* 6.3 0.4 - - + -
434F LEU* 4.2 37.5 - - + +
437F ASN* 5.2 5.8 - - - +
438F LEU* 3.7 30.5 - - + -
592F LEU* 3.0 24.0 + - + +
593F LEU* 3.1 16.3 + - + +
595F SER* 1.3 77.0 - - - +
597F VAL* 1.3 58.5 + - + +
599F SER* 3.0 6.3 + - - -
600F THR* 2.8 41.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 597 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478F ALA* 4.5 20.6 - - + +
481F LEU* 3.6 22.9 - - + -
482F SER* 3.6 24.5 - - - +
485F GLN* 4.8 0.9 - - - +
593F LEU* 3.1 21.7 + - + +
594F SER* 3.8 10.1 - - - +
595F SER 3.2 0.6 - - - -
596F VAL* 1.3 76.9 - - + +
598F ARG* 1.3 62.5 + - - +
600F THR* 4.0 9.2 - - + -
601F VAL* 3.0 27.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 598 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427F GLN* 5.9 0.2 + - - -
481F LEU* 5.0 0.8 - - - +
485F GLN* 2.9 43.5 + - - +
536F PHE* 4.1 25.6 - - + -
594F SER 4.0 2.1 + - - +
595F SER* 3.2 24.3 + - - +
596F VAL 3.1 0.2 - - - -
597F VAL* 1.3 80.2 - - - +
599F SER* 1.3 71.1 + - - +
602F LYS* 3.4 19.8 + - + +
1134F GLN* 3.2 52.9 + - - +
1135F HIS* 3.6 36.0 + - - -
1138F SER* 4.3 13.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 599 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427F GLN* 4.9 8.7 + - - +
430F TRP* 4.2 13.4 - - - +
431F PHE* 4.2 19.8 - - - +
434F LEU* 4.0 24.3 - - - +
595F SER 3.7 2.3 + - - -
596F VAL 3.0 7.8 + - - -
598F ARG* 1.3 91.3 + - - +
600F THR* 1.3 60.6 + - - +
602F LYS* 3.4 5.9 + - - +
603F ALA* 2.9 29.6 + - - +
1135F HIS* 5.9 0.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with THR 600 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288F TRP* 5.3 0.7 - - - -
431F PHE* 4.2 25.3 - - + -
438F LEU* 4.8 2.7 - - + +
596F VAL* 2.8 34.2 + - - +
597F VAL* 3.1 11.3 + - + +
599F SER* 1.3 74.5 - - - +
601F VAL* 1.3 67.5 + - - +
603F ALA* 3.2 4.3 + - - +
604F LEU* 3.0 22.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 601 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482F SER* 4.6 24.0 - - - +
485F GLN* 3.2 35.7 - - + +
486F ARG* 3.4 38.6 - - + +
489F LEU* 6.3 0.7 - - + -
597F VAL* 3.0 21.3 + - + +
600F THR* 1.3 77.1 - - - +
602F LYS* 1.3 61.5 + - - +
604F LEU* 3.4 8.2 + - + +
605F VAL* 2.9 32.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 602 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423F ILE* 6.3 1.3 - - - -
427F GLN* 3.2 47.7 + - + +
485F GLN* 4.0 8.3 - - - +
489F LEU* 3.7 40.8 - - + +
598F ARG* 3.4 25.7 + - + +
599F SER* 3.4 5.1 + - - +
600F THR 3.1 0.4 - - - -
601F VAL* 1.3 80.6 - - + +
603F ALA* 1.3 60.0 + - - +
605F VAL* 3.8 1.4 - - - +
606F SER* 2.9 33.6 + - - -
1130F ASN* 4.9 12.9 - - - +
1134F GLN* 2.4 37.2 + - - +
1135F HIS* 5.3 4.6 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 603 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288F TRP* 4.1 7.9 - - + -
427F GLN* 4.6 5.5 - - - +
428F LEU* 4.5 11.2 - - + -
431F PHE* 3.5 36.8 - - + -
599F SER 2.9 17.5 + - - +
600F THR 3.2 4.9 + - - +
602F LYS* 1.3 74.4 - - - +
604F LEU* 1.3 65.5 + - - +
606F SER* 3.3 6.0 + - - -
607F VAL* 3.0 29.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 604 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288F TRP* 3.8 24.1 - - + -
486F ARG* 3.3 28.5 - - - +
600F THR* 3.0 14.0 + - + +
601F VAL* 3.5 10.1 - - - +
602F LYS 3.3 0.2 - - - -
603F ALA* 1.3 78.1 - - - +
605F VAL* 1.3 58.2 + - + +
607F VAL* 3.3 1.4 + - + +
608F GLN* 3.0 54.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 605 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486F ARG* 3.8 36.6 - - + +
489F LEU* 3.7 31.6 - - + -
601F VAL* 2.9 24.6 + - + +
602F LYS 3.8 3.4 - - - +
603F ALA 3.3 0.2 - - - -
604F LEU* 1.3 76.2 - - + +
606F SER* 1.3 59.6 + - - +
608F GLN* 3.3 12.1 + - + +
609F LYS* 2.9 40.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 606 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423F ILE* 4.2 4.5 - - - +
424F ASP* 2.7 35.1 + - - +
427F GLN* 3.6 21.5 - - - +
428F LEU* 4.8 9.6 - - - -
489F LEU* 6.0 0.9 - - - +
602F LYS 2.9 19.2 + - - -
603F ALA* 3.7 7.2 - - - -
604F LEU 3.3 0.2 - - - -
605F VAL* 1.3 77.3 - - - +
607F VAL* 1.3 58.0 + - - +
609F LYS* 3.4 7.1 + - - +
610F LEU* 2.9 29.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 607 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284F ALA* 4.2 9.6 - - + +
287F ILE* 3.5 29.2 - - + -
288F TRP* 3.3 42.2 - - + -
291F LEU* 4.8 5.8 - - + -
428F LEU* 3.9 28.9 - - + -
603F ALA 3.0 14.0 + - - +
604F LEU* 6.1 0.2 - - + -
606F SER* 1.3 74.3 - - - +
608F GLN* 1.3 61.9 + - + +
610F LEU* 3.6 6.4 - - + +
611F SER* 2.8 31.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 608 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284F ALA* 4.9 12.3 - - + -
486F ARG* 5.1 10.1 + - - +
604F LEU* 3.0 46.6 + - + +
605F VAL* 3.3 10.4 + - - +
607F VAL* 1.3 79.0 - - + +
609F LYS* 1.3 57.0 + - - +
611F SER* 3.3 5.1 + - - -
612F GLU* 3.0 38.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 609 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416F GLN* 4.2 27.1 - - + +
419F ASN* 5.6 2.0 - - - +
420F LEU* 3.8 27.4 - - + +
423F ILE* 3.7 28.3 - - - +
424F ASP* 4.0 9.0 - - - +
489F LEU* 6.4 0.2 - - - +
493F ASN* 4.5 14.5 + - - +
605F VAL* 2.9 27.9 + - + +
606F SER* 3.6 4.7 + - - +
608F GLN* 1.3 76.3 - - - +
610F LEU* 1.3 56.9 + - - +
612F GLU* 3.3 9.7 + - - +
613F PHE* 2.9 28.2 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 610 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287F ILE* 5.2 13.5 - - + -
291F LEU* 6.4 0.9 - - + -
391F ILE* 4.5 30.1 - - + -
395F ILE* 3.5 29.2 - - + -
398F LYS* 6.1 0.2 - - - -
420F LEU* 4.2 22.6 - - + +
424F ASP* 5.1 4.5 - - + +
428F LEU* 4.7 13.9 - - + -
606F SER 2.9 18.1 + - - +
607F VAL* 3.2 8.0 + - + +
609F LYS* 1.3 76.3 - - - +
611F SER* 1.3 58.1 + - - +
613F PHE* 3.3 5.9 + - + -
614F LEU* 2.9 32.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 611 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283F GLY 4.2 2.9 + - - -
284F ALA* 3.3 39.7 + - - +
287F ILE* 3.4 22.8 - - - +
607F VAL 2.8 18.8 + - - -
608F GLN 3.8 2.5 - - - -
610F LEU* 1.3 75.9 - - - +
612F GLU* 1.3 64.2 + - - +
614F LEU* 3.3 8.5 + - - +
615F SER* 3.1 23.4 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 612 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608F GLN* 3.0 23.1 + - + +
609F LYS* 3.3 8.3 + - - +
611F SER* 1.3 76.6 - - - +
613F PHE* 1.3 61.1 + - - +
615F SER* 3.4 20.1 + - - -
616F SER* 3.9 2.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 613 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395F ILE* 4.5 6.5 - - + -
398F LYS* 3.2 40.0 - - - -
399F ILE* 4.0 17.0 - - + -
402F LEU* 4.1 14.6 - - + -
411F GLU 5.0 8.5 - - - -
412F MET* 5.0 4.5 - - + -
417F ILE* 3.7 39.7 - - + -
420F LEU* 3.8 33.7 - - + -
609F LYS* 2.9 17.5 + - + +
610F LEU* 3.6 13.5 - - + +
612F GLU* 1.3 74.8 - - - +
614F LEU* 1.3 64.0 + - - +
615F SER 3.1 0.8 + - - -
616F SER* 3.2 23.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 614 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270F PHE* 4.0 28.0 - - + -
283F GLY 6.3 0.9 - - - +
287F ILE* 5.2 8.1 - - + -
394F LYS* 4.4 30.1 - - + +
395F ILE* 6.3 2.7 - - + -
398F LYS* 3.4 33.1 - - + +
610F LEU* 2.9 21.4 + - + +
611F SER* 3.3 8.3 + - - +
613F PHE* 1.3 76.9 - - - +
615F SER* 1.3 57.9 + - - +
616F SER* 3.2 8.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 615 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611F SER 3.1 16.0 + - - -
612F GLU* 3.4 12.3 + - - -
613F PHE 3.1 1.2 - - - -
614F LEU* 1.3 76.5 - - - +
616F SER* 1.3 63.3 + - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il