180D Dna date Jul 19, 1994
title Sequence-Dependent Microheterogeneity Of Z-Dna: The Crystal Molecular Structures Of D(Cacgcg).D(Cgcgtg) And D(Cgcacg).D
authors C.Sadasivan, N.Gautham
compound source
Molecule: Dna (5'-D(Cpgpcpapcpg)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'-D(Cpgptpgpcpg)-3')
Chain: B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 1 1 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.750 17.760 42.770 90.00 90.00 120.05
method X-Ray Diffractionresolution 2.50 Å
Primary referenceSequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG)., Sadasivan C, Gautham N, J Mol Biol 1995 May 19;248(5):918-30. PMID:7760333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (180d.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 180D
  • Likely Quarternary Molecular Structure file(s) for 180D
  • Retrieve 180D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 180D from S2C, [Save to disk]
    • View 180D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 180D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 180D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [180d_B] [180d] [180d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 180D
  • Community annotation for 180D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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