1A1D Nucleotidyltransferase date Dec 10, 1997
title Yeast Rna Polymerase Subunit Rpb8, Nmr, Minimized Average Structure, Alpha Carbons Only
authors S.Krapp, G.Kelly, J.Reischl, R.Weinzierl, S.Matthews
compound source
Molecule: Rna Polymerase
Chain: A
Fragment: Subunit Rpb8
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.7.6 BRENDA
related structures by homologous chain: 1TWC
Gene
Ontology
ChainFunctionProcessComponent
A
  • RNA-directed 5'-3' RNA polym...


  • Primary referenceEukaryotic RNA polymerase subunit RPB8 is a new relative of the OB family., Krapp S, Kelly G, Reischl J, Weinzierl RO, Matthews S, Nat Struct Biol 1998 Feb;5(2):110-4. PMID:9461075
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5 Kb) [Save to disk]
  • Biological Unit Coordinates (1a1d.pdb1.gz) 4 Kb
  • CSU: Contacts of Structural Units for 1A1D
  • Retrieve 1A1D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A1D from S2C, [Save to disk]
  • View 1A1D in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1A1D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a1d__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1a1d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a1d] [1a1d_A]
  • SWISS-PROT database: [P20436]
  • Domain organization of [RPAB3_YEAST] by SWISSPFAM
  • Domain found in 1A1D: [RPOL8c ] by SMART
  • Other resources with information on 1A1D
  • Community annotation for 1A1D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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