1A32 Ribosomal Protein date Jan 27, 1998
title Ribosomal Protein S15 From Bacillus Stearothermophilus
authors W.M.Clemons Junior, C.Davies, S.W.White, V.Ramakrishnan
compound source
Molecule: Ribosomal Protein S15
Chain: A
Engineered: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Cell_line: Bl21
Cellular_location: Ribosome
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet-13a
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.020 33.750 75.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1G1X
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational variability of the N-terminal helix in the structure of ribosomal protein S15., Clemons WM Jr, Davies C, White SW, Ramakrishnan V, Structure 1998 Apr 15;6(4):429-38. PMID:9562554
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1a32.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1A32
  • Likely Quarternary Molecular Structure file(s) for 1A32
  • Structure Factors (69 Kb)
  • Retrieve 1A32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A32 from S2C, [Save to disk]
  • Re-refined 1a32 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A32 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A32
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A32, from MSDmotif at EBI
  • Genome occurence of 1A32's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a32__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a32_A] [1a32]
  • SWISS-PROT database: [P05766]
  • Domain organization of [RS15_BACST] by SWISSPFAM
  • Domain found in 1A32: [Ribosomal_S15 ] by SMART
  • Other resources with information on 1A32
  • Community annotation for 1A32 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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