1A71 Oxidoreductase date Mar 19, 1998
title Ternary Complex Of An Active Site Double Mutant Of Horse Liv Dehydrogenase, Phe93=>Trp, Val203=>Ala With Nad And Trifluo
authors T.D.Colby, B.J.Bahnson, J.K.Chin, J.P.Klinman, B.M.Goldstein
compound source
Molecule: Liver Alcohol Dehydrogenase
Chain: A, B
Ec: 1.1.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
Organ: Liver
Cellular_location: Cytoplasm
Gene: Ladh F93w V203a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Helper Phage
Expression_system_vector: Vcsm13
Expression_system_plasmid: Phagemid Pbpp-Ladh
Expression_system_gene: Ladh F93w,V203a
symmetry Space Group: P 1
R_factor 0.199 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.600 44.100 92.600 103.00 87.90 70.70
method X-Ray Diffractionresolution 2.00 Å
ligand ETF, NAD, ZN enzyme Oxidoreductase E.C.1.1.1.1 BRENDA
related structures by homologous chain: 1AXE, 1JU9
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceActive site modifications in a double mutant of liver alcohol dehydrogenase: structural studies of two enzyme-ligand complexes., Colby TD, Bahnson BJ, Chin JK, Klinman JP, Goldstein BM, Biochemistry 1998 Jun 30;37(26):9295-304. PMID:9649310
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1a71.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1A71
  • CSU: Contacts of Structural Units for 1A71
  • Likely Quarternary Molecular Structure file(s) for 1A71
  • Structure Factors (547 Kb)
  • Retrieve 1A71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A71 from S2C, [Save to disk]
  • Re-refined 1a71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A71
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A71, from MSDmotif at EBI
  • Genome occurence of 1A71's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a71a1, region A:1-163,A:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1a71a2, region A:164-339 [Jmol] [rasmolscript] [script source]
        - Domain d1a71b1, region B:1-163,B:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1a71b2, region B:164-339 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a71_A] [1a71_B] [1a71]
  • SWISS-PROT database: [P00327]
  • Domain organization of [ADH1E_HORSE] by SWISSPFAM
  • Other resources with information on 1A71
  • Community annotation for 1A71 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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