1A7V Electron Transport date Mar 18, 1998
title Cytochrome C' From Rhodopseudomonas Palustris
authors N.Shibata, S.Iba, S.Misaki, T.E.Meyer, R.G.Bartsch, M.A.Cusanovic Y.Higuchi, N.Yasuoka
compound source
Molecule: Cytochrome C'
Chain: A, B
 Organism_scientific: Rhodopseudomonas Palustris
Organism_taxid: 1076
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.000 113.500 34.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand HEM enzyme
related structures by homologous chain: 1MQV
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBasis for monomer stabilization in Rhodopseudomonas palustris cytochrome c' derived from the crystal structure., Shibata N, Iba S, Misaki S, Meyer TE, Bartsch RG, Cusanovich MA, Morimoto Y, Higuchi Y, Yasuoka N, J Mol Biol 1998 Dec 4;284(3):751-60. PMID:9826513
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1a7v.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (1a7v.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 1A7V
  • CSU: Contacts of Structural Units for 1A7V
  • Likely Quarternary Molecular Structure file(s) for 1A7V
  • Structure Factors (83 Kb)
  • Retrieve 1A7V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A7V from S2C, [Save to disk]
  • Re-refined 1a7v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1A7V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1A7V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A7V, from MSDmotif at EBI
  • Genome occurence of 1A7V's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a7va_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1a7vb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a7v_A] [1a7v_B] [1a7v]
  • SWISS-PROT database: [P00149]
  • Domain organization of [CYCP_RHOPA] by SWISSPFAM
    • Other resources with information on 1A7V
  • Community annotation for 1A7V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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