1AA9 Proto-Oncogene date Jan 27, 1997
title Human C-Ha-Ras(1-171)(Dot)Gdp, Nmr, Minimized Average Structure
authors Y.Ito, Y.Yamasaki, Y.Muto, G.Kawai, S.Nishimura, T.Miyazawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: C-Ha-Ras
Chain: A
Fragment: Residues 1 - 171
Engineered: Yes
Other_details: Complexed To Guanosine 5'-Diphosphate
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human C-Ha-Ras Gene
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
Expression_system_plasmid: Prgh
Expression_system_gene: Human C-Ha-Ras Gene
methodSolution NMR
ligand GDP, MG enzyme
related structures by homologous chain: 1CRP

Primary referenceRegional polysterism in the GTP-bound form of the human c-Ha-Ras protein., Ito Y, Yamasaki K, Iwahara J, Terada T, Kamiya A, Shirouzu M, Muto Y, Kawai G, Yokoyama S, Laue ED, Walchli M, Shibata T, Nishimura S, Miyazawa T, Biochemistry 1997 Jul 29;36(30):9109-19. PMID:9230043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1AA9
  • CSU: Contacts of Structural Units for 1AA9
  • Original NMR restraints for 1AA9 from PDB
  • Retrieve 1AA9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AA9 from S2C, [Save to disk]
  • View 1AA9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AA9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AA9, from MSDmotif at EBI
  • Genome occurence of 1AA9's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1aa9__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1aa9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aa9_A] [1aa9]
  • SWISS-PROT database: [P01112]
  • Domain organization of [RASH_HUMAN] by SWISSPFAM
  • Domain found in 1AA9: [RAS ] by SMART
  • Other resources with information on 1AA9
  • Community annotation for 1AA9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1AA9 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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