1ABB Glycogen Phosphorylase date Apr 09, 1992
title Control Of Phosphorylase B Conformation By A Modified Cofactor: Crystallographic Studies On R-State Glycogen Phosphorylase Reconstituted With Pyridoxal 5'-Diphosphate
authors D.D.Leonidas, N.G.Oikonomakos, A.C.Papageorgiou, K.R.Acharya, D.Barford, L.N.Johnson
compound source
Molecule: Glycogen Phosphorylase B
Chain: A, B, C, D
Ec: 2.4.1.1
Engineered: Yes
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.000 188.100 88.100 90.00 109.29 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand IMP, PDP, SO4 enzyme Transferase E.C.2.4.1.1 BRENDA
related structures by homologous chain: 1NOI, 6GPB
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceControl of phosphorylase b conformation by a modified cofactor: crystallographic studies on R-state glycogen phosphorylase reconstituted with pyridoxal 5'-diphosphate., Leonidas DD, Oikonomakos NG, Papageorgiou AC, Acharya KR, Barford D, Johnson LN, Protein Sci 1992 Sep;1(9):1112-22. PMID:1304390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (550 Kb) [Save to disk]
  • Biological Unit Coordinates (1abb.pdb1.gz) 545 Kb
  • LPC: Ligand-Protein Contacts for 1ABB
  • CSU: Contacts of Structural Units for 1ABB
  • Likely Quarternary Molecular Structure file(s) for 1ABB
  • Retrieve 1ABB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ABB from S2C, [Save to disk]
    • View 1ABB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ABB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ABB, from MSDmotif at EBI
  • Genome occurence of 1ABB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1abba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1abbb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1abbc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1abbd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1abb_A] [1abb] [1abb_C] [1abb_B] [1abb_D]
  • SWISS-PROT database: [P00489]
  • Domain organization of [PYGM_RABIT] by SWISSPFAM
    • Other resources with information on 1ABB
  • Community annotation for 1ABB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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