OCA Atlas for 1AFE

1AFE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ALZ, NAG, TYS

enzyme

related structures

by homologous chain: 1D6W, 1HBT, 1QJ1

Gene
Ontology

Chain	Function	Process	Component
H
L

Primary reference

Human alpha-thrombin inhibition by the highly selective compounds N-ethoxycarbonyl-D-Phe-Pro-alpha-azaLys p-nitrophenyl ester and N-carbobenzoxy-Pro-alpha-azaLys p-nitrophenyl ester: a kinetic, thermodynamic and X-ray crystallographic study., De Simone G, Balliano G, Milla P, Gallina C, Giordano C, Tarricone C, Rizzi M, Bolognesi M, Ascenzi P, J Mol Biol 1997 Jun 20;269(4):558-69. PMID:9217260

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]

Biological Unit Coordinates (1afe.pdb1.gz) 53 Kb

LPC: Ligand-Protein Contacts for 1AFE

CSU: Contacts of Structural Units for 1AFE

Likely Quarternary Molecular Structure file(s) for 1AFE

Structure Factors (174 Kb)

Retrieve 1AFE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1AFE from S2C, [Save to disk]

Re-refined 1afe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1AFE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1afe] [1afe_H] [1afe_I] [1afe_L]

SWISS-PROT database: [P01050] [P00734]

Domain found in 1AFE: [Tryp_SPc ] by SMART

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