1ALX Antibiotic date Jun 05, 1997
title Gramicidin D From Bacillus Brevis (Methanol Solvate)
authors B.M.Burkhart, D.A.Langs, G.D.Smith, C.Courseille, G.Precigoux, M. W.A.Pangborn, W.L.Duax
compound source
Molecule: Gramicidin A
Chain: A
Synonym: Valyl Gramicidin
 Organism_scientific: Brevibacillus Brevis
Organism_taxid: 1393

Molecule: Gramicidin A
Chain: B
Synonym: Valyl Gramicidin
Organism_scientific: Brevibacillus Brevis
Organism_taxid: 1393
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
14.907 26.014 31.911 90.00 92.03 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand DLE, DVA, ETA, FVA, MOH enzyme
Primary referenceHeterodimer formation and crystal nucleation of gramicidin D., Burkhart BM, Gassman RM, Langs DA, Pangborn WA, Duax WL, Biophys J 1998 Nov;75(5):2135-46. PMID:9788907
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1alx.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1ALX
  • CSU: Contacts of Structural Units for 1ALX
  • Likely Quarternary Molecular Structure file(s) for 1ALX
  • Structure Factors (55 Kb)
  • Retrieve 1ALX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ALX from S2C, [Save to disk]
    • View 1ALX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ALX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1ALX 1ALXA 1ALXB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ALX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1alxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1alxb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1alx_A] [1alx] [1alx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1ALX
  • Community annotation for 1ALX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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