1APJ Extracellular Matrix date Jul 22, 1997
title Nmr Study Of The Transforming Growth Factor Beta Binding Protein-Like Domain (Tb Module8-Cys Domain), Nmr, 21 Structures
authors X.Yuan, A.K.Downing, V.Knott, P.A.Handford
compound source
Molecule: Fibrillin
Chain: A
Fragment: Transforming Growth Factor Beta Binding Protein- Like Domain 6(Tb6), Residues 2054 - 2125;
Engineered: Yes
Fragment: Transforming Growth Factor Beta Binding Protein- Like Domain 6(Tb6), Residues 2054-2125;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nm554
Expression_system_plasmid: Pqe30
methodSolution NMR
note 1APJ is a representative structure
Primary referenceSolution structure of the transforming growth factor beta-binding protein-like module, a domain associated with matrix fibrils., Yuan X, Downing AK, Knott V, Handford PA, EMBO J 1997 Nov 17;16(22):6659-66. PMID:9362480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (377 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1APJ
  • Retrieve 1APJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1APJ from S2C, [Save to disk]
  • View 1APJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1APJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1APJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1apj__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1apj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1apj] [1apj_A]
  • SWISS-PROT database: [P35555]
  • Domain organization of [FBN1_HUMAN] by SWISSPFAM
  • Other resources with information on 1APJ
  • Community annotation for 1APJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science