1AVC Calcium Phospholipid-Binding Protein date Sep 16, 1997
title Bovine Annexin Vi (Calcium-Bound)
authors A.J.Avila-Sakar, C.E.Creutz, R.H.Kretsinger
compound source
Molecule: Annexin Vi
Chain: A
Synonym: P68, Protein III, 67-Kda-Calcimedin, Lipocortin Vi Calelectrin, Chromobindin 20, Calphobindin II
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Liver
Cellular_location: Membrane-Peripheral
symmetry Space Group: P 43
R_factor 0.205 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.404 67.404 200.078 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA enzyme
related structures by homologous chain: 1M9I
Gene
Ontology
ChainFunctionProcessComponent
A
  • cargo receptor activity


    • Primary referenceCrystal structure of bovine annexin VI in a calcium-bound state., Avila-Sakar AJ, Creutz CE, Kretsinger RH, Biochim Biophys Acta 1998 Sep 8;1387(1-2):103-16. PMID:9748523
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (1avc.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1AVC
  • CSU: Contacts of Structural Units for 1AVC
  • Likely Quarternary Molecular Structure file(s) for 1AVC
  • Structure Factors (294 Kb)
  • Retrieve 1AVC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AVC from S2C, [Save to disk]
  • Re-refined 1avc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1AVC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AVC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AVC, from MSDmotif at EBI
  • Genome occurence of 1AVC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1avc_1, region 10-350 [Jmol] [rasmolscript] [script source]
        - Domain d1avc_2, region 351-671 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1avc] [1avc_A]
  • SWISS-PROT database: [P79134]
  • Domain organization of [ANXA6_BOVIN] by SWISSPFAM
  • Domain found in 1AVC: [ANX ] by SMART
    • Other resources with information on 1AVC
  • Community annotation for 1AVC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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