1AYF Electron Transport date Nov 03, 1997
title Bovine Adrenodoxin (Oxidized)
authors A.Mueller, J.J.Mueller, U.Heinemann
compound source
Molecule: Adrenodoxin
Chain: A, B
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Adrenal Gland
Organelle: Mitochondrion
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hb 101
Expression_system_plasmid: Pkkhc, Pmixt
symmetry Space Group: P 21 21 2
R_factor 0.195 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.180 78.340 60.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand FES, GOL enzyme
related structures by homologous chain: 1E6E
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNew aspects of electron transfer revealed by the crystal structure of a truncated bovine adrenodoxin, Adx(4-108)., Muller A, Muller JJ, Muller YA, Uhlmann H, Bernhardt R, Heinemann U, Structure 1998 Mar 15;6(3):269-80. PMID:9551550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1ayf.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1AYF
  • CSU: Contacts of Structural Units for 1AYF
  • Likely Quarternary Molecular Structure file(s) for 1AYF
  • Structure Factors (155 Kb)
  • Retrieve 1AYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AYF from S2C, [Save to disk]
  • Re-refined 1ayf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AYF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AYF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ayfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ayfb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ayf_A] [1ayf] [1ayf_B]
  • SWISS-PROT database: [P00257]
  • Domain organization of [ADX_BOVIN] by SWISSPFAM
  • Other resources with information on 1AYF
  • Community annotation for 1AYF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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