1AZZ Complex (Serine Protease Inhibitor) date Nov 24, 1997
title Fiddler Crab Collagenase Complexed To Ecotin
authors J.J.Perona, R.J.Fletterick
compound source
Molecule: Collagenase
Chain: A, B
Ec: 3.4.21.32
Organism_scientific: Celuca Pugilator
Organism_common: Atlantic Sand Fiddler Crab
Organism_taxid: 6772
Other_details: Crab Hepatopancreas

Molecule: Ecotin
Chain: C, D
Synonym: Trypsin Inhibitor

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Plasmid: Ptactac
symmetry Space Group: P 32 2 1
R_factor 0.189 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.110 89.110 291.550 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Hydrolase E.C.3.4.21.32 BRENDA
related structures by homologous chain: 1EZS, 1SLV
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C
  • serine-type endopeptidase in...


  • Primary referenceCrystal structure of an ecotin-collagenase complex suggests a model for recognition and cleavage of the collagen triple helix., Perona JJ, Tsu CA, Craik CS, Fletterick RJ, Biochemistry 1997 May 6;36(18):5381-92. PMID:9154920
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (1azz.pdb1.gz) 113 Kb
  • CSU: Contacts of Structural Units for 1AZZ
  • Likely Quarternary Molecular Structure file(s) for 1AZZ
  • Retrieve 1AZZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AZZ from S2C, [Save to disk]
  • View 1AZZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AZZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AZZ, from MSDmotif at EBI
  • Genome occurence of 1AZZ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1azza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1azzb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1azzc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1azzd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1azz_A] [1azz] [1azz_B] [1azz_D] [1azz_C]
  • SWISS-PROT database: [P00771] [P23827]
  • Domain organization of [COGS_UCAPU] [ECOT_ECOLI] by SWISSPFAM
  • Domain found in 1AZZ: [Tryp_SPc ] by SMART
  • Other resources with information on 1AZZ
  • Community annotation for 1AZZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1AZZ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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