1B07 Sh3 Domain date Nov 17, 1998
title Crk Sh3 Domain Complexed With Peptoid Inhibitor
authors J.T.Nguyen, C.W.Turck, F.E.Cohen, R.N.Zuckermann, W.A.Lim
compound source
Molecule: Protein (Proto-Oncogene Crk (Crk))
Chain: A
Fragment: Sh3 Domain
Synonym: P38, Adapter Molecule Crk
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1

Molecule: Protein (Sh3 Peptoid Inhibitor)
Chain: C
Engineered: Yes

symmetry Space Group: P 43
R_factor 0.242 R_Free 0.354
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.800 36.800 52.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand PYJ enzyme
related structures by homologous chain: 1CKB, 1M3C
Primary referenceExploiting the basis of proline recognition by SH3 and WW domains: design of N-substituted inhibitors., Nguyen JT, Turck CW, Cohen FE, Zuckermann RN, Lim WA, Science 1998 Dec 11;282(5396):2088-92. PMID:9851931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1b07.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1B07
  • CSU: Contacts of Structural Units for 1B07
  • Likely Quarternary Molecular Structure file(s) for 1B07
  • Retrieve 1B07 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B07 from S2C, [Save to disk]
  • View 1B07 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B07
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1B07, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b07a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1b07 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b07] [1b07_A] [1b07_C]
  • SWISS-PROT database: [Q64010]
  • Domain organization of [CRK_MOUSE] by SWISSPFAM
  • Domain found in 1B07: [SH3 ] by SMART
  • Other resources with information on 1B07
  • Community annotation for 1B07 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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