1BFV	Immunoglobulin	date	May 27, 1997
title	Monoclonal Antibody Fragment Fv4155 From E. Coli
authors	C.H.Trinh, S.E.V.Phillips
compound		source
Molecule: Fv4155 Chain: L Fragment: Monoclonal Antibody Fv Fragment Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109
Molecule: Fv4155 Chain: H Fragment: Monoclonal Antibody Fv Fragment Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109
symmetry	Space Group: P 4 21 2	R_factor 0.187 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.900 89.900 59.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	STG, ZN	enzyme
related structures	by homologous chain: 1CFV, 1F2X, 1MHH, 1MLC
Gene Ontology	Chain Function Process Component H L
Primary reference	Antibody fragment Fv4155 bound to two closely related steroid hormones: the structural basis of fine specificity., Trinh CH, Hemmington SD, Verhoeyen ME, Phillips SE, Structure 1997 Jul 15;5(7):937-48. PMID:9261086

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (1bfv.pdb1.gz) 41 Kb Biological Unit Coordinates (1bfv.pdb2.gz) 80 Kb Biological Unit Coordinates (1bfv.pdb3.gz) 80 Kb Biological Unit Coordinates (1bfv.pdb4.gz) 41 Kb LPC: Ligand-Protein Contacts for 1BFV CSU: Contacts of Structural Units for 1BFV Likely Quarternary Molecular Structure file(s) for 1BFV Structure Factors (109 Kb) Retrieve 1BFV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BFV from S2C, [Save to disk] Re-refined 1bfv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1BFV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BFV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BFV, from MSDmotif at EBI Genome occurence of 1BFV's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bfvh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1bfvl_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bfv_H] [1bfv_L] [1bfv] SWISS-PROT database: [P01631] Domain organization of [KV2A7_MOUSE] by SWISSPFAM Domain found in 1BFV: [IGv ] by SMART

Other resources with information on 1BFV

Community annotation for 1BFV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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