1BH8 Transcription Regulation Complex date Jun 16, 1998
title Htafii18htafii28 Heterodimer Crystal Structure
authors C.Birck, O.Poch, C.Romier, M.Ruff, G.Mengus, A.C.Lavigne, I.David D.Moras
compound source
Molecule: Tafii18
Chain: A
Fragment: Residues 31 - 75
Synonym: Transcription Initiation Factor Tfiid 18 Kd Subuni
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Hela
Cellular_location: Nucleus
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet15b

Molecule: Tafii28
Chain: B
Fragment: Residues 113 - 201
Synonym: Transcription Initiation Factor Tfiid 28 Kd Subuni
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Hela
Cellular_location: Nucleus
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.400 48.400 77.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
related structures by homologous chain: 1BH9
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceHuman TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family., Birck C, Poch O, Romier C, Ruff M, Mengus G, Lavigne AC, Davidson I, Moras D, Cell 1998 Jul 24;94(2):239-49. PMID:9695952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1bh8.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1BH8
  • Likely Quarternary Molecular Structure file(s) for 1BH8
  • Retrieve 1BH8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BH8 from S2C, [Save to disk]
  • View 1BH8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BH8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BH8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bh8a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bh8b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bh8] [1bh8_B] [1bh8_A]
  • SWISS-PROT database: [Q15544] [Q15543]
  • Domain organization of [TAF11_HUMAN] [TAF13_HUMAN] by SWISSPFAM
  • Other resources with information on 1BH8
  • Community annotation for 1BH8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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