1BIJ Oxygen Transport date Jun 18, 1998
title Crosslinked, Deoxy Human Hemoglobin A
authors E.J.Fernandez, C.Abad-Zapatero, K.W.Olsen
compound source
Molecule: Hemoglobin A
Chain: A, C
Other_details: Lys B82d82 Crosslinked Hemoglobin
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Hemoglobin A
Chain: B, D
Other_details: Lys B82d82 Crosslinked Hemoglobin

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.300 96.000 101.500 90.00 101.50 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 2FU, HEM enzyme
related structures by homologous chain: 1HAB, 1O1I
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


  • D, B
  • peroxidase activity


  • Primary referenceCrystal structure of Lysbeta(1)82-Lysbeta(2)82 crosslinked hemoglobin: a possible allosteric intermediate., Fernandez EJ, Abad-Zapatero C, Olsen KW, J Mol Biol 2000 Mar 10;296(5):1245-56. PMID:10698631
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1bij.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 1BIJ
  • CSU: Contacts of Structural Units for 1BIJ
  • Likely Quarternary Molecular Structure file(s) for 1BIJ
  • Retrieve 1BIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BIJ from S2C, [Save to disk]
  • View 1BIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BIJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BIJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bija_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bijb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1bijc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1bijd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1bij from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bij_C] [1bij_D] [1bij] [1bij_B] [1bij_A]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
  • Other resources with information on 1BIJ
  • Community annotation for 1BIJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BIJ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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