1BK8 Plant Defensin date Jul 15, 1998
title Determination Of The Three-Dimensional Solution Structure Of Hippocastanum Antimicrobial Protein 1 (Ah-Amp1) By 1h Nmr, Structures
authors F.Fant, F.A.M.Borremans
compound source
Molecule: Antimicrobial Protein 1
Chain: A
Synonym: Ah-Amp1
Organism_scientific: Aesculus Hippocastanum
Organism_common: Common Horse Chestnut
Organism_taxid: 43364
Organ: Seed
methodSolution NMR
note 1BK8 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe three-dimensional solution structure of Aesculus hippocastanum antimicrobial protein 1 determined by 1H nuclear magnetic resonance., Fant F, Vranken WF, Borremans FA, Proteins 1999 Nov 15;37(3):388-403. PMID:10591099
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk]
  • Biological Unit Coordinates (1bk8.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1BK8
  • Original NMR restraints for 1BK8 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1BK8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BK8 from S2C, [Save to disk]
  • View 1BK8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BK8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BK8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bk8__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bk8_A] [1bk8]
  • SWISS-PROT database: [Q7M1F3]
  • Domain organization of [DEF1_AESHI] by SWISSPFAM
  • Domain found in 1BK8: [Knot1 ] by SMART
  • Other resources with information on 1BK8
  • Community annotation for 1BK8 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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