1BR0 Membrane Protein date Aug 25, 1998
title Three Dimensional Structure Of The N-Terminal Domain Of Synt
authors I.Fernandez, J.Ubach, I.Dubulova, X.Zhang, T.C.Sudhof, J.Rizo
compound source
Molecule: Protein (Syntaxin 1-A)
Chain: A
Fragment: N-Terminal
Engineered: Yes
Mutation: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 1BR0 (Molecule of the Month:pdb167)
related structures by homologous chain: 1DN1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure of an evolutionarily conserved N-terminal domain of syntaxin 1A., Fernandez I, Ubach J, Dulubova I, Zhang X, Sudhof TC, Rizo J, Cell 1998 Sep 18;94(6):841-9. PMID:9753330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (501 Kb) [Save to disk]
  • Biological Unit Coordinates (1br0.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1BR0
  • Retrieve 1BR0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BR0 from S2C, [Save to disk]
    • View 1BR0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BR0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BR0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1br0a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1br0] [1br0_A]
  • SWISS-PROT database: [P32851]
  • Domain organization of [STX1A_RAT] by SWISSPFAM
  • Domain found in 1BR0: [SynN ] by SMART
    • Other resources with information on 1BR0
  • Community annotation for 1BR0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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