1BU9 Hormone Growth Factor date Sep 15, 1998
title Solution Structure Of P18-Ink4c, 21 Structures
authors I.J.L.Byeon, J.Li, M.D.Tsai
compound source
Molecule: Protein (Cyclin-Dependent Kinase 6 Inhibitor)
Chain: A
Synonym: P18-Ink4c
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dl21(De3)
Expression_system_plasmid: Dl21(De3)
methodSolution NMR
related structures by homologous chain: 1G3N
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTumor suppressor INK4: determination of the solution structure of p18INK4C and demonstration of the functional significance of loops in p18INK4C and p16INK4A., Li J, Byeon IJ, Ericson K, Poi MJ, O'Maille P, Selby T, Tsai MD, Biochemistry 1999 Mar 9;38(10):2930-40. PMID:10074345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (861 Kb) [Save to disk]
  • Biological Unit Coordinates (1bu9.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 1BU9
  • Original NMR restraints for 1BU9 from PDB
  • Retrieve 1BU9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BU9 from S2C, [Save to disk]
    • View 1BU9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BU9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BU9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bu9a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bu9_A] [1bu9]
  • SWISS-PROT database: [P42773]
  • Domain organization of [CDN2C_HUMAN] by SWISSPFAM
  • Domain found in 1BU9: [ANK ] by SMART
    • Other resources with information on 1BU9
  • Community annotation for 1BU9 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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