1BXE Rna Binding Protein date Oct 02, 1998
title Ribosomal Protein L22 From Thermus Thermophilus
authors J.Unge, A.Aberg, S.Al-Karadaghi, A.Nikulin, S.Nikonov, N.Davydova N.Nevskaya, M.Garber, A.Liljas
compound source
Molecule: Protein (Ribosomal Protein L22)
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Cellular_location: Ribosome
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.640 65.930 67.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, MSE enzyme
related structures by homologous chain: 1I4J
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of ribosomal protein L22 from Thermus thermophilus: insights into the mechanism of erythromycin resistance., Unge J, berg A, Al-Kharadaghi S, Nikulin A, Nikonov S, Davydova N, Nevskaya N, Garber M, Liljas A, Structure 1998 Dec 15;6(12):1577-86. PMID:9862810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1bxe.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1BXE
  • CSU: Contacts of Structural Units for 1BXE
  • Likely Quarternary Molecular Structure file(s) for 1BXE
  • Structure Factors (266 Kb)
  • Retrieve 1BXE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BXE from S2C, [Save to disk]
  • Re-refined 1bxe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BXE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BXE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BXE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bxea_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bxe_A] [1bxe]
  • SWISS-PROT database: [P48286]
  • Domain organization of [RL22_THETH] by SWISSPFAM
  • Other resources with information on 1BXE
  • Community annotation for 1BXE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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