1BZ0 Oxygen Storage Transport date Nov 04, 1998
title Hemoglobin A (Human, Deoxy, High Salt)
authors J.S.Kavanaugh, A.Arnone
compound source
Molecule: Protein (Hemoglobin Alpha Chain)
Chain: A, C
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Red Blood Cell

Molecule: Protein (Hemoglobin Beta Chain)
Chain: B, D
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Red Blood Cell
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.300 83.600 53.800 90.00 99.40 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand HEM enzyme
related structures by homologous chain: 1BAB, 1UIW
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


    • D, B
  • peroxidase activity


    • Primary referenceAccommodation of insertions in helices: the mutation in hemoglobin Catonsville (Pro 37 alpha-Glu-Thr 38 alpha) generates a 3(10)-->alpha bulge., Kavanaugh JS, Moo-Penn WF, Arnone A, Biochemistry 1993 Mar 16;32(10):2509-13. PMID:8448109
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1bz0.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1BZ0
  • CSU: Contacts of Structural Units for 1BZ0
  • Likely Quarternary Molecular Structure file(s) for 1BZ0
  • Structure Factors (633 Kb)
  • Retrieve 1BZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BZ0 from S2C, [Save to disk]
  • Re-refined 1bz0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1BZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BZ0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1BZ0 1BZ0A 1BZ0B 1BZ0C 1BZ0D from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BZ0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bz0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bz0b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1bz0c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1bz0d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bz0_B] [1bz0_D] [1bz0_A] [1bz0] [1bz0_C]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
    • Other resources with information on 1BZ0
  • Community annotation for 1BZ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1BZ0 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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