1C5P Hydrolase date Dec 22, 1999
title Structural Basis For Selectivity Of A Small Molecule, S1-Bin Micromolar Inhibitor Of Urokinase Type Plasminogen Activato
authors B.A.Katz, R.Mackman, C.Luong, K.Radika, A.Martelli, P.A.Sprengele H.Chan, L.Wong
compound source
Molecule: Protein (Trypsin)
Chain: A
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 31 2 1
R_factor 0.197 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.830 54.830 109.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.43 Å
ligand BAM, CA, MG, SO4 BindingDB enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for selectivity of a small molecule, S1-binding, submicromolar inhibitor of urokinase-type plasminogen activator., Katz BA, Mackman R, Luong C, Radika K, Martelli A, Sprengeler PA, Wang J, Chan H, Wong L, Chem Biol 2000 Apr;7(4):299-312. PMID:10779411
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1c5p.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 1C5P
  • CSU: Contacts of Structural Units for 1C5P
  • Likely Quarternary Molecular Structure file(s) for 1C5P
  • Structure Factors (312 Kb)
  • Retrieve 1C5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C5P from S2C, [Save to disk]
  • Re-refined 1c5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1C5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C5P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1C5P from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1C5P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c5pa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1c5p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c5p_A] [1c5p]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1C5P: [Tryp_SPc ] by SMART
  • Other resources with information on 1C5P
  • Community annotation for 1C5P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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