1C7C Oxygen Storage Transport date Feb 09, 2000
title Deoxy Rhb1.1 (Recombinant Hemoglobin)
authors E.A.Brucker
compound source
Molecule: Protein (Deoxyhemoglobin (Alpha Chain))
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Red Blood Cell
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein (Deoxyhemoglobin (Beta Chain))
Chain: B, D
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Red Blood Cell
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.204 83.357 54.003 90.00 99.07 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand HEM enzyme
related structures by homologous chain: 1A3N, 1CBM, 1IBE
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity


  • D, B
  • peroxidase activity


  • Primary referenceGenetically crosslinked hemoglobin: a structural study., Brucker EA, Acta Crystallogr D Biol Crystallogr 2000 Jul;56 ( Pt 7):812-6. PMID:10930828
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (1c7c.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 1C7C
  • CSU: Contacts of Structural Units for 1C7C
  • Likely Quarternary Molecular Structure file(s) for 1C7C
  • Structure Factors (690 Kb)
  • Retrieve 1C7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C7C from S2C, [Save to disk]
  • Re-refined 1c7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1C7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C7C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C7C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c7ca1, region A:1-142 [Jmol] [rasmolscript] [script source]
        - Domain d1c7ca2, region A:143-283 [Jmol] [rasmolscript] [script source]
        - Domain d1c7cb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1c7cd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c7c_B] [1c7c] [1c7c_A] [1c7c_D]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
  • Other resources with information on 1C7C
  • Community annotation for 1C7C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1C7C from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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