1C7E Electron Transport date Feb 16, 2000
title D95e Hydroquinone Flavodoxin Mutant From D. Vulgaris
authors A.Mccarthy, M.Walsh, T.Higgins, D.D'Arcy
compound source
Molecule: Flavodoxin
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Desulfovibrio Vulgaris
Organism_taxid: 881
Strain: Tg2
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg2
symmetry Space Group: C 1 2 1
R_factor 0.227 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.041 61.508 75.559 90.00 127.06 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand FMN enzyme
related structures by homologous chain: 1AKV, 1J9G
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceCrystallographic investigation of the role of aspartate 95 in the modulation of the redox potentials of Desulfovibrio vulgaris flavodoxin., McCarthy AA, Walsh MA, Verma CS, O'Connell DP, Reinhold M, Yalloway GN, D'Arcy D, Higgins TM, Voordouw G, Mayhew SG, Biochemistry 2002 Sep 10;41(36):10950-62. PMID:12206666
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1c7e.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (1c7e.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1C7E
  • CSU: Contacts of Structural Units for 1C7E
  • Likely Quarternary Molecular Structure file(s) for 1C7E
  • Structure Factors (118 Kb)
  • Retrieve 1C7E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C7E from S2C, [Save to disk]
  • Re-refined 1c7e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1C7E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C7E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C7E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c7ea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1c7eb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c7e_B] [1c7e_A] [1c7e]
  • SWISS-PROT database: [P00323]
  • Domain organization of [FLAV_DESVH] by SWISSPFAM
  • Other resources with information on 1C7E
  • Community annotation for 1C7E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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