1CDB T Lymphocyte Adhesion Glycoprotein date Sep 15, 1993
title Structure Of The Glycosylated Adhesion Domain Of Human T Lym Glycoprotein Cd2
authors D.F.Wyss, J.M.Withka, M.A.Recny, G.Wagner
compound source
Molecule: Cd2
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Ovary
Gene: Potential
methodSolution NMR
related structures by homologous chain: 1GYA
Primary referenceStructure of the glycosylated adhesion domain of human T lymphocyte glycoprotein CD2., Withka JM, Wyss DF, Wagner G, Arulanandam AR, Reinherz EL, Recny MA, Structure 1993 Sep 15;1(1):69-81. PMID:7915183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (266 Kb) [Save to disk]
  • Biological Unit Coordinates (1cdb.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 1CDB
  • Retrieve 1CDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CDB from S2C, [Save to disk]
  • View 1CDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CDB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CDB, from MSDmotif at EBI
  • Genome occurence of 1CDB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cdb__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cdb_A] [1cdb]
  • SWISS-PROT database: [P06729]
  • Domain organization of [CD2_HUMAN] by SWISSPFAM
  • Other resources with information on 1CDB
  • Community annotation for 1CDB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1CDB from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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