1CDO Oxidoreductase (Ch-Oh(D)-Nad(A)) date Sep 29, 1995
title Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed W Nicotinamide Adenine Dinucleotide (Nad), And Zinc
authors H.Eklund
compound source
Molecule: Alcohol Dehydrogenase
Chain: A, B
Ec: 1.1.1.1
 Organism_scientific: Gadus Callarias
Organism_common: Baltic Cod
Organism_taxid: 8053
Organ: Liver
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.950 47.600 80.430 90.00 104.66 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand NAD, ZN enzyme Oxidoreductase E.C.1.1.1.1 BRENDA
related structures by homologous chain: 1M6H
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of cod liver class I alcohol dehydrogenase: substrate pocket and structurally variable segments., Ramaswamy S, el Ahmad M, Danielsson O, Jornvall H, Eklund H, Protein Sci 1996 Apr;5(4):663-71. PMID:8845755
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (1cdo.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 1CDO
  • CSU: Contacts of Structural Units for 1CDO
  • Likely Quarternary Molecular Structure file(s) for 1CDO
  • Structure Factors (308 Kb)
  • Retrieve 1CDO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CDO from S2C, [Save to disk]
  • Re-refined 1cdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1CDO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CDO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CDO, from MSDmotif at EBI
  • Genome occurence of 1CDO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cdoa1, region A:1-164,A:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1cdoa2, region A:165-339 [Jmol] [rasmolscript] [script source]
        - Domain d1cdob1, region B:1-164,B:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1cdob2, region B:165-339 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cdo_A] [1cdo_B] [1cdo]
  • SWISS-PROT database: [P26325]
  • Domain organization of [ADH1_GADCA] by SWISSPFAM
    • Other resources with information on 1CDO
  • Community annotation for 1CDO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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