1CS3 Transcription date Aug 16, 1999
title Structure Of Btbpoz Transcription Repression Domain From Pr Leukemia Zinc Finger Oncoprotein
authors X.Li, F.J.Rauscher Iii, R.Marmorstein
compound source
Molecule: Zinc Finger Protein Plzf
Chain: A
Fragment: Btbpoz
Synonym: Promyelocytic Leukemia Zinc Finger Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30 T5
symmetry Space Group: I 2 2 2
R_factor 0.228 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.800 78.200 85.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, MG enzyme
related structures by homologous chain: 1BUO
Primary referenceStructure-function studies of the BTB/POZ transcriptional repression domain from the promyelocytic leukemia zinc finger oncoprotein., Li X, Peng H, Schultz DC, Lopez-Guisa JM, Rauscher FJ 3rd, Marmorstein R, Cancer Res 1999 Oct 15;59(20):5275-82. PMID:10537309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1cs3.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (1cs3.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 1CS3
  • CSU: Contacts of Structural Units for 1CS3
  • Likely Quarternary Molecular Structure file(s) for 1CS3
  • Retrieve 1CS3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CS3 from S2C, [Save to disk]
    • View 1CS3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CS3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CS3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cs3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cs3] [1cs3_A]
  • SWISS-PROT database: [Q05516]
  • Domain organization of [ZBT16_HUMAN] by SWISSPFAM
  • Domain found in 1CS3: [BTB ] by SMART
    • Other resources with information on 1CS3
  • Community annotation for 1CS3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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