1CVU	Oxidoreductase Peptide	date	Aug 24, 1999
title	Crystal Structure Of Arachidonic Acid Bound To The Cyclooxyg Active Site Of Cox-2
authors	J.R.Kiefer, J.L.Pawlitz, K.T.Moreland, R.A.Stegeman, J.K.Gierse, A.M.Stevens, D.C.Goodwin, S.W.Rowlinson, L.J.Marnett, W.C.Stall R.G.Kurumbail
compound		source
Molecule: Prostaglandin H2 Synthase-2 Chain: A, B Fragment: Prostaglandin H2 Synthase-2 Ec: 1.14.99.1 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_plasmid: Pvl1393
Molecule: Protein (9-Mer) Chain: F Engineered: Yes Other_details: Synthetic		Synthetic: Yes
symmetry	Space Group: I 2 2 2	R_factor 0.204 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 181.036 133.960 124.834 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ACD, BOG, MAN, NAG	enzyme	Oxidoreductase E.C.1.14.99.1 BRENDA
related structures	by homologous chain: 1EQG, 1Q4G
Gene Ontology	Chain Function Process Component A, B peroxidase activity
Primary reference	Structural insights into the stereochemistry of the cyclooxygenase reaction., Kiefer JR, Pawlitz JL, Moreland KT, Stegeman RA, Hood WF, Gierse JK, Stevens AM, Goodwin DC, Rowlinson SW, Marnett LJ, Stallings WC, Kurumbail RG, Nature 2000 May 4;405(6782):97-101. PMID:10811226

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk] Biological Unit Coordinates (1cvu.pdb1.gz) 197 Kb LPC: Ligand-Protein Contacts for 1CVU CSU: Contacts of Structural Units for 1CVU Likely Quarternary Molecular Structure file(s) for 1CVU Structure Factors (463 Kb) Retrieve 1CVU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CVU from S2C, [Save to disk] Re-refined 1cvu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1CVU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1CVU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1CVU, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1cvua2, region A:33-73 [Jmol] [rasmolscript] [script source]     - Domain d1cvua1, region A:74-583 [Jmol] [rasmolscript] [script source]     - Domain d1cvub2, region B:2033-2073 [Jmol] [rasmolscript] [script source]     - Domain d1cvub1, region B:2074-2583 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1cvu_A] [1cvu] [1cvu_B] [1cvu_F] SWISS-PROT database: [Q05769] Domain organization of [PGH2_MOUSE] by SWISSPFAM Domain found in 1CVU: [EGF ] by SMART

Other resources with information on 1CVU

Community annotation for 1CVU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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