1CYC Electron Transport date Aug 01, 1976
title The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C A Angstroms Resolution. II. Structure And Function
authors N.Tanaka, T.Yamane, T.Tsukihara, T.Ashida, M.Kakudo
compound source
Molecule: Ferrocytochrome C
Chain: A, B
Engineered: Yes
 Organism_scientific: Katsuwonus Pelamis
Organism_common: Skipjack Tuna
Organism_taxid: 8226
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.680 84.580 37.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand HEC enzyme
related structures by homologous chain: 1RAP, 2PCC
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • Primary referenceThe crystal structure of bonito (katsuo) ferrocytochrome c at 2.3 A resolution. II. Structure and function., Tanaka N, Yamane T, Tsukihara T, Ashida T, Kakudo M, J Biochem (Tokyo) 1975 Jan 1;77(1?):147-62. PMID:166072
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1cyc.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (1cyc.pdb2.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1CYC
  • CSU: Contacts of Structural Units for 1CYC
  • Likely Quarternary Molecular Structure file(s) for 1CYC
  • Retrieve 1CYC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CYC from S2C, [Save to disk]
    • View 1CYC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CYC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CYC, from MSDmotif at EBI
  • Genome occurence of 1CYC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cyc__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cyc] [1cyc_B] [1cyc_A]
  • SWISS-PROT database: [P00025]
  • Domain organization of [CYC_KATPE] by SWISSPFAM
    • Other resources with information on 1CYC
  • Community annotation for 1CYC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1CYC from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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