1D2J	Signaling Protein	date	Sep 23, 1999
title	Ldl Receptor Ligand-Binding Module 6
authors	C.L.North, S.C.Blacklow
compound		source
Molecule: Low-Density Lipoprotein Receptor Chain: A Fragment: Ligand-Binding Domain, Sixth Repeat Synonym: Lr6 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmm-Lr6
method	Solution NMR
ligand	CA	enzyme
related structures	by homologous chain: 1F8Z
Primary reference	Solution structure of the sixth LDL-A module of the LDL receptor., North CL, Blacklow SC, Biochemistry 2000 Mar 14;39(10):2564-71. PMID:10704205

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk] Biological Unit Coordinates (1d2j.pdb1.gz) 10 Kb LPC: Ligand-Protein Contacts for 1D2J CSU: Contacts of Structural Units for 1D2J Original NMR restraints for 1D2J from PDB Retrieve 1D2J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D2J from S2C, [Save to disk]

View 1D2J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D2J

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D2J, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d2ja_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d2j_A] [1d2j] SWISS-PROT database: [P01130] Domain organization of [LDLR_HUMAN] by SWISSPFAM Domain found in 1D2J: [LDLa ] by SMART

Other resources with information on 1D2J

Community annotation for 1D2J at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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