1D31	THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTS	date
authors	Joshua-Tor, L., Frolow, F., Appella, E., Hope, H., Rabinovich, D., Sussman, J.L.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.60
Primary reference	Three-dimensional structures of bulge-containing DNA fragments., Joshua-Tor L, Frolow F, Appella E, Hope H, Rabinovich D, Sussman JL, J Mol Biol 1992 May 20;225(2):397-431. PMID:1593627

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk] Biological Unit Coordinates (1d31.pdb1.gz) 11 Kb CSU: Contacts of Structural Units for 1D31 Likely Quarternary Molecular Structure file(s) for 1D31 Retrieve 1D31 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D31 from S2C, [Save to disk]

View 1D31 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D31

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D31, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d31_B] [1d31_A] [1d31] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 1D31

Community annotation for 1D31 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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