1D8A Oxidoreductase date Oct 21, 1999
title E. Coli Enoyl Reductasenad+Triclosan Complex
authors C.W.Levy, A.Roujeinikova, S.Sedelnikova, P.J.Baker, A.R.Stuitje, A.R.Slabas, D.W.Rice, J.B.Rafferty
compound source
Molecule: Enoyl-[Acyl-Carrier-Protein] Reductase
Chain: A, B
Ec: 1.3.1.9
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 61 2 2
R_factor
R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.600 80.600 327.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand NAD, TCL BindingDB enzyme Oxidoreductase E.C.1.3.1.9 BRENDA
related structures by homologous chain: 1DFH, 1MFP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular basis of triclosan activity., Levy CW, Roujeinikova A, Sedelnikova S, Baker PJ, Stuitje AR, Slabas AR, Rice DW, Rafferty JB, Nature 1999 Apr 1;398(6726):383-4. PMID:10201369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1d8a.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 1D8A
  • CSU: Contacts of Structural Units for 1D8A
  • Likely Quarternary Molecular Structure file(s) for 1D8A
  • Retrieve 1D8A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D8A from S2C, [Save to disk]
  • View 1D8A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D8A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D8A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d8aa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1d8ab_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d8a_A] [1d8a] [1d8a_B]
  • SWISS-PROT database: [P0AEK4]
  • Domain organization of [FABI_ECOLI] by SWISSPFAM
  • Other resources with information on 1D8A
  • Community annotation for 1D8A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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