1DD2 Transferase date Nov 06, 1999
title Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc 1.3s)
authors D.V.Reddy, B.C.Shenoy, P.R.Carey, F.D.Sonnichsen
compound source
Molecule: Transcarboxylase 1.3s Subunit
Chain: A
Ec: 2.1.3.1
Engineered: Yes
Organism_scientific: Propionibacterium Freudenreichii Subsp Shermanii;
Organism_taxid: 1752
Strain: Subsp. Shermanii
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hb101
Expression_system_vector: Pet20b
methodSolution NMR
ligand
enzyme Transferase E.C.2.1.3.1 BRENDA
related structures by homologous chain: 1DCZ
Primary referenceHigh resolution solution structure of the 1.3S subunit of transcarboxylase from Propionibacterium shermanii., Reddy DV, Shenoy BC, Carey PR, Sonnichsen FD, Biochemistry 2000 Mar 14;39(10):2509-16. PMID:10704200
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (603 Kb) [Save to disk]
  • Biological Unit Coordinates (1dd2.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1DD2
  • Original NMR restraints for 1DD2 from PDB
  • Retrieve 1DD2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DD2 from S2C, [Save to disk]
  • View 1DD2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DD2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DD2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dd2a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1k1dd2, region D:53-384 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dd2] [1dd2_A]
  • SWISS-PROT database: [P02904]
  • Domain organization of [BCCP_PROFR] by SWISSPFAM
  • Other resources with information on 1DD2
  • Community annotation for 1DD2 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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