1DG9	Hydrolase	date	Nov 23, 1999
title	Crystal Structure Of Bovine Low Molecular Weight Ptpase Comp Hepes
authors	M.Zhang, M.Zhou, R.L.Van Etten, C.V.Stauffacher
compound		source
Molecule: Tyrosine Phosphatase Chain: A Ec: 3.1.3.48 Engineered: Yes		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Organ: Heart Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet
symmetry	Space Group: C 1 2 1	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.300 43.400 41.200 90.00 113.40 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	EPE	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
related structures	by homologous chain: 1PHR
Gene Ontology	Chain Function Process Component A protein tyrosine phosphatase... non-membrane spanning protei...
Primary reference	Crystal structure of bovine low molecular weight phosphotyrosyl phosphatase complexed with the transition state analog vanadate., Zhang M, Zhou M, Van Etten RL, Stauffacher CV, Biochemistry 1997 Jan 7;36(1):15-23. PMID:8993313

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk] Biological Unit Coordinates (1dg9.pdb1.gz) 26 Kb LPC: Ligand-Protein Contacts for 1DG9 CSU: Contacts of Structural Units for 1DG9 Likely Quarternary Molecular Structure file(s) for 1DG9 Retrieve 1DG9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DG9 from S2C, [Save to disk]

View 1DG9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DG9

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DG9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dg9a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dg9] [1dg9_A] SWISS-PROT database: [P11064] Domain organization of [PPAC_BOVIN] by SWISSPFAM Domain found in 1DG9: [LMWPc ] by SMART

Other resources with information on 1DG9

Community annotation for 1DG9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1DG9 from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---