1DGR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PO4 enzyme
related structures by homologous chain: 1CAV, 1CAX, 1IPJ, 1PHS
Gene
Ontology
ChainFunctionProcessComponent
X, B, A, W, M, N, C, Y, V


Primary referenceX-ray diffraction and atomic force microscopy analysis of twinned crystals: rhombohedral canavalin., Ko TP, Kuznetsov YG, Malkin AJ, Day J, McPherson A, Acta Crystallogr D Biol Crystallogr 2001 Jun;57(Pt 6):829-39. Epub 2001, May 25. PMID:11375502
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (1dgr.pdb1.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 1DGR
  • CSU: Contacts of Structural Units for 1DGR
  • Likely Quarternary Molecular Structure file(s) for 1DGR
  • Structure Factors (217 Kb)
  • Retrieve 1DGR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DGR from S2C, [Save to disk]
  • Re-refined 1dgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DGR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dgr_Y] [1dgr] [1dgr_A] [1dgr_B] [1dgr_C] [1dgr_M] [1dgr_N] [1dgr_V] [1dgr_W] [1dgr_X]
  • SWISS-PROT database: [P50477]
  • Domain found in 1DGR: [Cupin_1 ] by SMART

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