1DIO date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand B12, K, PGO enzyme
related structures by homologous chain: 1EGM, 1IWP, 1UC5
Gene
Ontology
ChainFunctionProcessComponent
B, G, E, M


L, A


Primary referenceA new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase., Shibata N, Masuda J, Tobimatsu T, Toraya T, Suto K, Morimoto Y, Yasuoka N, Structure Fold Des 1999 Aug 15;7(8):997-1008. PMID:10467140
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk]
  • Biological Unit Coordinates (1dio.pdb1.gz) 277 Kb
  • LPC: Ligand-Protein Contacts for 1DIO
  • CSU: Contacts of Structural Units for 1DIO
  • Likely Quarternary Molecular Structure file(s) for 1DIO
  • Structure Factors (843 Kb)
  • Retrieve 1DIO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DIO from S2C, [Save to disk]
  • Re-refined 1dio structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DIO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dio_B] [1dio_E] [1dio_G] [1dio_L] [1dio_M] [1dio] [1dio_A]
  • SWISS-PROT database: [Q59470] [Q59471] [Q59472]

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