1DMP	Aspartyl Proteinase	date	Nov 01, 1996
title	Structure Of Hiv-1 Protease Complex
authors	C.H.Chang
compound		source
Molecule: Hiv-1 Protease Chain: A, B Ec: 3.4.23.16 Engineered: Yes Other_details: Complex With Dmp450 Of Dupont Merck		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Strain: Bh102 Isolate Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61	R_factor 0.210 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.800 62.800 83.500 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CSO, DMQ BindingDB	enzyme	Hydrolase E.C.3.4.23.16 BRENDA
related structures	by homologous chain: 1MSM, 1NPV
Gene Ontology	Chain Function Process Component A, B
Primary reference	Improved cyclic urea inhibitors of the HIV-1 protease: synthesis, potency, resistance profile, human pharmacokinetics and X-ray crystal structure of DMP 450., Hodge CN, Aldrich PE, Bacheler LT, Chang CH, Eyermann CJ, Garber S, Grubb M, Jackson DA, Jadhav PK, Korant B, Lam PY, Maurin MB, Meek JL, Otto MJ, Rayner MM, Reid C, Sharpe TR, Shum L, Winslow DL, Erickson-Viitanen S, Chem Biol 1996 Apr;3(4):301-14. PMID:8807858

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (1dmp.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 1DMP CSU: Contacts of Structural Units for 1DMP Likely Quarternary Molecular Structure file(s) for 1DMP Retrieve 1DMP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DMP from S2C, [Save to disk]

View 1DMP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DMP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DMP, from MSDmotif at EBI Genome occurence of 1DMP's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dmpa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1dmpb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dmp] [1dmp_B] [1dmp_A] SWISS-PROT database: [P04585] Domain organization of [POL_HV1H2] by SWISSPFAM

Other resources with information on 1DMP

Community annotation for 1DMP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---