1DNY SOLUTION STRUCTURE OF PCP, A PROTOTYPE FOR THE PEPTIDYL CARRIER DOMAINS OF MODULAR PEPTIDE SYNTHETASES date
authors Weber, T., Baumgartner, R., Renner, C., Marahiel, M.A., Holak, T.A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 21 Modelsresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of PCP, a prototype for the peptidyl carrier domains of modular peptide synthetases., Weber T, Baumgartner R, Renner C, Marahiel MA, Holak TA, Structure Fold Des 2000 Apr 15;8(4):407-18. PMID:10801488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (406 Kb) [Save to disk]
  • Biological Unit Coordinates (1dny.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1DNY
  • Retrieve 1DNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DNY from S2C, [Save to disk]
  • View 1DNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DNY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DNY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dnya_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dny] [1dny_A]
  • SWISS-PROT database: [O30409]
  • Domain organization of [TYCC_BREPA] by SWISSPFAM
  • Other resources with information on 1DNY
  • Community annotation for 1DNY at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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