1DO8	Oxidoreductase	date	Dec 19, 1999
title	Crystal Structure Of A Closed Form Of Human Mitochondrial Na Dependent Malic Enzyme
authors	Z.Yang, D.L.Floyd, G.Loeber, L.Tong
compound		source
Molecule: Malic Enzyme Chain: A, B, C, D Ec: 1.1.1.39 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prh281
symmetry	Space Group: C 1 2 1	R_factor 0.204 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 229.000 118.700 113.000 90.00 109.60 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	MN, MSE, NAD, OXL	enzyme	Oxidoreductase E.C.1.1.1.39 BRENDA
related structures	by homologous chain: 1GZ4, 1QR6
Gene Ontology	Chain Function Process Component A, D, C, B electron transfer activity
Primary reference	Structure of a closed form of human malic enzyme and implications for catalytic mechanism., Yang Z, Floyd DL, Loeber G, Tong L, Nat Struct Biol 2000 Mar;7(3):251-7. PMID:10700286

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (382 Kb) [Save to disk] Biological Unit Coordinates (1do8.pdb1.gz) 370 Kb LPC: Ligand-Protein Contacts for 1DO8 CSU: Contacts of Structural Units for 1DO8 Likely Quarternary Molecular Structure file(s) for 1DO8 Retrieve 1DO8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DO8 from S2C, [Save to disk]

View 1DO8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DO8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DO8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1do8a2, region A:21-279 [Jmol] [rasmolscript] [script source]     - Domain d1do8a1, region A:280-573 [Jmol] [rasmolscript] [script source]     - Domain d1do8b2, region B:21-279 [Jmol] [rasmolscript] [script source]     - Domain d1do8b1, region B:280-573 [Jmol] [rasmolscript] [script source]     - Domain d1do8c2, region C:21-279 [Jmol] [rasmolscript] [script source]     - Domain d1do8c1, region C:280-573 [Jmol] [rasmolscript] [script source]     - Domain d1do8d2, region D:21-279 [Jmol] [rasmolscript] [script source]     - Domain d1do8d1, region D:280-573 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1do8_D] [1do8_B] [1do8_C] [1do8_A] [1do8] SWISS-PROT database: [P23368] Domain organization of [MAOM_HUMAN] by SWISSPFAM Domains found in 1DO8: [Malic_M] [malic ] by SMART

Other resources with information on 1DO8

Community annotation for 1DO8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---