1DOZ Lyase date Dec 22, 1999
title Crystal Structure Of Ferrochelatase
authors D.Lecerof, M.Fodje, A.Hansson, M.Hansson, S.Al-Karadaghi
compound source
Molecule: Ferrochelatase
Chain: A
Ec: 4.99.1.1
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.510 49.970 119.240 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MG enzyme Lyase E.C.4.99.1.1 BRENDA
related structures by homologous chain: 1C1H
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and mechanistic basis of porphyrin metallation by ferrochelatase., Lecerof D, Fodje M, Hansson A, Hansson M, Al-Karadaghi S, J Mol Biol 2000 Mar 17;297(1):221-32. PMID:10704318
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1doz.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1DOZ
  • CSU: Contacts of Structural Units for 1DOZ
  • Likely Quarternary Molecular Structure file(s) for 1DOZ
  • Structure Factors (204 Kb)
  • Retrieve 1DOZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DOZ from S2C, [Save to disk]
  • Re-refined 1doz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DOZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DOZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DOZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1doza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1doz_A] [1doz]
  • SWISS-PROT database: [P32396]
  • Domain organization of [HEMH_BACSU] by SWISSPFAM
    • Other resources with information on 1DOZ
  • Community annotation for 1DOZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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