1DQ8 COMPLEX OF THE CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE WITH HMG AND COA date
authors Istvan, E.S., Palnitkar, M., Buchanan, S.K., Deisenhofer, J.
compound source
symmetry
R_factor
R_Free 0.2390000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand COA, DTT, MAH BindingDB enzyme
related structures by homologous chain: 1HW8, 1HWL
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of the catalytic portion of human HMG-CoA reductase: insights into regulation of activity and catalysis., Istvan ES, Palnitkar M, Buchanan SK, Deisenhofer J, EMBO J 2000 Mar 1;19(5):819-30. PMID:10698924
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (1dq8.pdb1.gz) 254 Kb
  • LPC: Ligand-Protein Contacts for 1DQ8
  • CSU: Contacts of Structural Units for 1DQ8
  • Likely Quarternary Molecular Structure file(s) for 1DQ8
  • Structure Factors (449 Kb)
  • Retrieve 1DQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DQ8 from S2C, [Save to disk]
    • View 1DQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DQ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DQ8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dq8a4, region A:439-586,A:704-863 [Jmol] [rasmolscript] [script source]
        - Domain d1dq8a1, region A:587-703 [Jmol] [rasmolscript] [script source]
        - Domain d1dq8b4, region B:461-586,B:704-865 [Jmol] [rasmolscript] [script source]
        - Domain d1dq8b1, region B:587-703 [Jmol] [rasmolscript] [script source]
        - Domain d1dq8c4, region C:464-586,C:704-865 [Jmol] [rasmolscript] [script source]
        - Domain d1dq8c1, region C:587-703 [Jmol] [rasmolscript] [script source]
        - Domain d1dq8d4, region D:458-586,D:704-864 [Jmol] [rasmolscript] [script source]
        - Domain d1dq8d1, region D:587-703 [Jmol] [rasmolscript] [script source]
  • Fold representative 1dq8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dq8_A] [1dq8_D] [1dq8_C] [1dq8_B] [1dq8]
  • SWISS-PROT database: [P04035]
  • Belongs to the resistance-nodulation-cell division (rnd) superfamily according to TCDB.
  • Domain organization of [HMDH_HUMAN] by SWISSPFAM
    • Other resources with information on 1DQ8
  • Community annotation for 1DQ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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