1DU2 Transferase date Jan 13, 2000
title Solution Structure Of The Theta Subunit Of Dna Polymerase II
authors M.A.Keniry, H.A.Berthon, J.Y.Yang, C.S.Miles, N.E.Dixon
compound source
Molecule: Dna Polymerase III
Chain: A
Fragment: Theta Subunit
Ec: 2.7.7.7
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcm869
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.7.7 BRENDA
related structures by homologous chain: 1SE7
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...


    • Primary referenceNMR solution structure of the theta subunit of DNA polymerase III from Escherichia coli., Keniry MA, Berthon HA, Yang JY, Miles CS, Dixon NE, Protein Sci 2000 Apr;9(4):721-33. PMID:10794414
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (422 Kb) [Save to disk]
  • Biological Unit Coordinates (1du2.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1DU2
  • Original NMR restraints for 1DU2 from PDB
  • Retrieve 1DU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DU2 from S2C, [Save to disk]
    • View 1DU2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DU2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DU2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1du2a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1du2] [1du2_A]
  • SWISS-PROT database: [P0ABS8]
  • Domain organization of [HOLE_ECOLI] by SWISSPFAM
    • Other resources with information on 1DU2
  • Community annotation for 1DU2 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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