1DXV HIGH-RESOLUTION X-RAY STUDY OF DEOXY RECOMBINANT HUMAN HEMOGLOBINS SYNTHESIZED FROM BETA-GLOBINS HAVING MUTATED AMINO TERMINI date
authors Kavanaugh, J.S., Arnone, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand HEM, SO4 enzyme
related structures by homologous chain: 1DXT, 1DXU, 1SDL
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


    • D, B
  • peroxidase activity


    • Primary referenceHigh-resolution X-ray study of deoxy recombinant human hemoglobins synthesized from beta-globins having mutated amino termini., Kavanaugh JS, Rogers PH, Arnone A, Biochemistry 1992 Sep 15;31(36):8640-7. PMID:1390648
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1dxv.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 1DXV
  • CSU: Contacts of Structural Units for 1DXV
  • Likely Quarternary Molecular Structure file(s) for 1DXV
  • Structure Factors (208 Kb)
  • Retrieve 1DXV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DXV from S2C, [Save to disk]
  • Re-refined 1dxv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DXV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DXV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DXV, from MSDmotif at EBI
  • Genome occurence of 1DXV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dxva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dxvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1dxvc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1dxvd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dxv_B] [1dxv_D] [1dxv_A] [1dxv] [1dxv_C]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
    • Other resources with information on 1DXV
  • Community annotation for 1DXV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1DXV from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science