1DZO Cell Adhesion date Mar 06, 2000
title Truncated Pak Pilin From Pseudomonas Aeruginosa
authors B.Hazes, R.J.Read
compound source
Molecule: Type Iv Pilin
Chain: A
Fragment: Globular Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Aeruginosa Pak
Organism_taxid: 1009714
Cellular_location: Extracellular Filamentous Appendage
Gene: Pila
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_cellular_location: Periplasmic Space
Expression_system_plasmid: Prld
Other_details: Residues 22-28 Are From The Expression Vecto Residues 29-144 Are From The Mature Protein.
symmetry Space Group: P 41 21 2
R_factor 0.153 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.114 38.114 149.775 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
related structures by homologous chain: 1X6P, 1X6R
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of Pseudomonas aeruginosa PAK pilin suggests a main-chain-dominated mode of receptor binding., Hazes B, Sastry PA, Hayakawa K, Read RJ, Irvin RT, J Mol Biol 2000 Jun 16;299(4):1005-17. PMID:10843854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1dzo.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 1DZO
  • Likely Quarternary Molecular Structure file(s) for 1DZO
  • Structure Factors (143 Kb)
  • Retrieve 1DZO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DZO from S2C, [Save to disk]
  • Re-refined 1dzo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DZO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DZO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DZO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dzoa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dzo_A] [1dzo]
  • SWISS-PROT database: [P02973]
  • Domain organization of [FMPA_PSEAE] by SWISSPFAM
  • Other resources with information on 1DZO
  • Community annotation for 1DZO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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