1E2H Transferase date May 23, 2000
title The Nucleoside Binding Site Of Herpes Simplex Type 1 Thymidi Analyzed By X-Ray Crystallography
authors J.Vogt, L.Scapozza, G.E.Schulz
compound source
Molecule: Thymidine Kinase
Chain: A, B
Ec: 2.7.1.21
Engineered: Yes
Organism_scientific: Herpes Simplex Virus (Type 1 Strain
Organism_taxid: 10299
Strain: 17
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.215 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.900 117.300 107.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SO4 enzyme Transferase E.C.2.7.1.21 BRENDA
related structures by homologous chain: 1E2I, 1E2K
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNucleoside binding site of herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography., Vogt J, Perozzo R, Pautsch A, Prota A, Schelling P, Pilger B, Folkers G, Scapozza L, Schulz GE, Proteins 2000 Dec 1;41(4):545-53. PMID:11056041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (1e2h.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 1E2H
  • CSU: Contacts of Structural Units for 1E2H
  • Likely Quarternary Molecular Structure file(s) for 1E2H
  • Structure Factors (421 Kb)
  • Retrieve 1E2H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E2H from S2C, [Save to disk]
  • Re-refined 1e2h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E2H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E2H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E2H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e2ha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e2hb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e2h_A] [1e2h] [1e2h_B]
  • SWISS-PROT database: [P03176]
  • Domain organization of [KITH_HHV11] by SWISSPFAM
  • Other resources with information on 1E2H
  • Community annotation for 1E2H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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