1E4U Gene Regulation date Jul 12, 2000
title N-Terminal Ring Finger Domain Of Human Not-4
authors H.Hanzawa, M.J.De Ruwe, T.K.Albert, P.C.Van Der Vliet, H.T.Timmers, R.Boelens
compound source
Molecule: Transcriptional Repressor Not4
Chain: A
Fragment: Ring Finger Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1UR6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of the C4C4 ring finger of human NOT4 reveals features distinct from those of C3HC4 RING fingers., Hanzawa H, de Ruwe MJ, Albert TK, van Der Vliet PC, Timmers HT, Boelens R, J Biol Chem 2001 Mar 30;276(13):10185-90. PMID:11087754
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (626 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1E4U
  • CSU: Contacts of Structural Units for 1E4U
  • Original NMR restraints for 1E4U from PDB
  • Retrieve 1E4U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E4U from S2C, [Save to disk]
    • View 1E4U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1E4U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E4U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e4ua_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e4u] [1e4u_A]
  • SWISS-PROT database: [O95628]
  • Domain organization of [CNOT4_HUMAN] by SWISSPFAM
  • Domain found in 1E4U: [RING ] by SMART
    • Other resources with information on 1E4U
  • Community annotation for 1E4U at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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